[HTML][HTML] Genomic prediction models for traits differing in heritability for soybean, rice, and maize

AS Kaler, LC Purcell, T Beissinger, JD Gillman - BMC plant biology, 2022 - Springer
… the prediction accuracy of different genomic prediction models for crop species differing in LD
and marker density, for traits … -to-testing population affected prediction accuracy. To build a …

Multi-trait, multi-environment deep learning modeling for genomic-enabled prediction of plant traits

OA Montesinos-López… - G3: Genes, genomes …, 2018 - academic.oup.com
… exploit the correlation between traits, which many times helps improve prediction accuracy.
For … of multi-trait deep learning (MTDL) models in terms of prediction accuracy. The prediction

Pitfalls and remedies for cross validation with multi-trait genomic prediction methods

D Runcie, H Cheng - G3: Genes, Genomes, Genetics, 2019 - academic.oup.com
… We expect that multi-trait methods for genomic prediction carry great promise to accelerate
both plant and animal breeding. However there is a need to design better methods to …

[HTML][HTML] KAML: improving genomic prediction accuracy of complex traits using machine learning determined parameters

L Yin, H Zhang, X Zhou, X Yuan, S Zhao, X Li, X Liu - Genome biology, 2020 - Springer
trait whose genetic architecture could never be known in practice. Computational efficiency
is an important requirement for the application of genomic selection and genomic prediction (…

[HTML][HTML] Accuracy of single and multi-trait genomic prediction models for grain yield in US Pacific Northwest winter wheat

DN Lozada, AH Carter - Crop Breeding, Genetics and Genomics, 2019 - hapres.com
… factors affecting prediction ability. Our results showed the relevance of using multi-trait GS
models to achieve increased predictions. Genetic architecture of the target trait and genetic …

[HTML][HTML] Whole-genome sequence-based genomic prediction in laying chickens with different genomic relationship matrices to account for genetic architecture

G Ni, D Cavero, A Fangmann, M Erbe… - Genetics Selection …, 2017 - Springer
… in genomic prediction analyses. Four weighting factors for building a trait-specific genomic
… The objective of this study was to compare results from genomic prediction analyses using …

Using genomic prediction to detect microevolutionary change of a quantitative trait

DC Hunter, B Ashraf, C Bérénos… - … of the Royal …, 2022 - royalsocietypublishing.org
… Here, we apply a genomic prediction approach to estimate breeding values of … Genomic
and pedigree-based approaches gave largely consistent results. Thus, using genomic prediction

[HTML][HTML] Genome-wide association study and genomic prediction on plant architecture traits in sweet corn and waxy corn

D Dang, Y Guan, H Zheng, X Zhang, A Zhang, H Wang… - plants, 2023 - mdpi.com
Genomic prediction is a method of using markers to predict the genetic value of complex traits
… When genomic prediction is used for selection, it is called genomic selection (GS). GS is a …

[HTML][HTML] Marker selection in multivariate genomic prediction improves accuracy of low heritability traits

J Klápště, HS Dungey, EJ Telfer, M Suontama… - Frontiers in …, 2020 - frontiersin.org
… of genomic prediction for traits with relatively low heritability and poor prediction accuracy, …
multi-trait models using a relationship matrix based only on prioritized markers. Our primary …

A genome-wide association and prediction study in grapevine deciphers the genetic architecture of multiple traits and identifies genes under many new QTLs

T Flutre, L Le Cunff, A Fodor, A Launay, C Romieu… - G3, 2022 - academic.oup.com
genome association and prediction for various traits of interest in grapevine breeding, likely
to display different genetic architectures… , how accurate genomic prediction might be, and …