Genomic selection and association mapping in rice (Oryza sativa): effect of trait genetic architecture, training population composition, marker number and statistical …
… trait were varied to determine their effect on prediction accuracy. For all three traits, genomic
prediction models outperformed prediction … Prediction accuracies ranged from 0.31 and 0.34 …
prediction models outperformed prediction … Prediction accuracies ranged from 0.31 and 0.34 …
Multi-trait, multi-environment genomic prediction of durum wheat with genomic best linear unbiased predictor and deep learning methods
OA Montesinos-López, A Montesinos-López… - Frontiers in Plant …, 2019 - frontiersin.org
… approach for genomic prediction, but also that the deep learning method is a practical
approach for predicting univariate and multivariate traits in the context of genomic selection. …
approach for predicting univariate and multivariate traits in the context of genomic selection. …
Predictive performance of genomic selection methods for carcass traits in Hanwoo beef cattle: impacts of the genetic architecture
… The aim of our study was to evaluate methods for genomic prediction in Hanwoo cattle. …
architecture of traits, were used to compare the accuracy of genomic predictions for the traits BT, …
architecture of traits, were used to compare the accuracy of genomic predictions for the traits BT, …
Parametric and nonparametric statistical methods for genomic selection of traits with additive and epistatic genetic architectures
R Howard, AL Carriquiry… - G3: Genes, Genomes …, 2014 - academic.oup.com
… Parametric and nonparametric methods have been developed for purposes of predicting …
are unable to predict phenotypes of traits with known epistatic genetic architectures. Herein, we …
are unable to predict phenotypes of traits with known epistatic genetic architectures. Herein, we …
Genomic Prediction for Quantitative Traits Is Improved by Mapping Variants to Gene Ontology Categories in Drosophila melanogaster
SM Edwards, IF Sørensen, P Sarup, TFC Mackay… - Genetics, 2016 - academic.oup.com
… of genomic prediction models. We developed a genomic feature best linear unbiased
prediction (GFBLUP) model that implements this strategy and applied it to three quantitative traits (…
prediction (GFBLUP) model that implements this strategy and applied it to three quantitative traits (…
[HTML][HTML] Limited haplotype diversity underlies polygenic trait architecture across 70 years of wheat breeding
MF Scott, N Fradgley, AR Bentley, T Brabbs, F Corke… - Genome Biology, 2021 - Springer
… We trained genomic prediction models using three shrinkage methods: ridge regression (RR),
least absolute shrinkage and selection operator (LASSO), and elastic nets (EN), using 50 …
least absolute shrinkage and selection operator (LASSO), and elastic nets (EN), using 50 …
Exploiting biological priors and sequence variants enhances QTL discovery and genomic prediction of complex traits
IM MacLeod, PJ Bowman, CJ Vander Jagt… - BMC genomics, 2016 - Springer
… LD to improve the precision of QTL (quantitative trait loci) discovery and prediction. We
compare the accuracy of genomic prediction in validation individuals that are not closely related …
compare the accuracy of genomic prediction in validation individuals that are not closely related …
[HTML][HTML] Using whole-genome sequence data to predict quantitative trait phenotypes in Drosophila melanogaster
U Ober, JF Ayroles, EA Stone, S Richards, D Zhu… - PLoS …, 2012 - journals.plos.org
… , but not using complete genome sequences. Here, we report genomic prediction for starvation
stress … We constructed a genomic relationship matrix from the SNP data and used it in a …
stress … We constructed a genomic relationship matrix from the SNP data and used it in a …
Genetic architecture of plant stress resistance: multi‐trait genome‐wide association mapping
… Finally, within each experiment, the traits were replaced by the first principal … all traits in this
experiment; in all other cases, the original traits were retained. An overview of final traits and …
experiment; in all other cases, the original traits were retained. An overview of final traits and …
Genomic prediction including SNP-specific variance predictors
EF Mouresan, M Selle… - G3: Genes, Genomes …, 2019 - academic.oup.com
… In order to investigate the performance of the alternative models for traits with different
genetic architectures we simulated a trait controlled by an increasing number of QTL with each …
genetic architectures we simulated a trait controlled by an increasing number of QTL with each …