[HTML][HTML] The omnigenic model and polygenic prediction of complex traits

I Mathieson - The American Journal of Human Genetics, 2021 - cell.com
… We have learned an enormous amount about the genetic architecture of complex traits
these data and to develop models of complex trait architecture, like the omnigenic model, that are …

Genomic Prediction Informed by Biological Processes Expands Our Understanding of the Genetic Architecture Underlying Free Amino Acid Traits in Dry Arabidopsis …

SD Turner-Hissong, KA Bird, AE Lipka… - … : Genes, Genomes …, 2020 - academic.oup.com
… , with only a few candidate genes and quantitative trait loci identified to date. Improved
knowledge … Toward this goal, we used genomic prediction to identify biological processes that are …

Genomic prediction in contrast to a genome-wide association study in explaining heritable variation of complex growth traits in breeding populations of Eucalyptus

BSF Müller, LG Neves, JE de Almeida Filho… - BMC genomics, 2017 - Springer
… In this study, we report the development of genomic prediction models for growth traits in
two breeding populations of E. benthamii (n =505) and E. pellita (n =732) using SNP data …

Evaluating sequence-based genomic prediction with an efficient new simulator

M Pérez-Enciso, N Forneris, G de Los Campos… - Genetics, 2017 - academic.oup.com
… The first factor is the genetic architecture of the trait, together with the demographic history of
… derive prediction equations plays a role as well. The genetic determinism of complex traits

Genome-wide association studies and whole-genome prediction reveal the genetic architecture of KRN in maize

Y An, L Chen, YX Li, C Li, Y Shi, D Zhang, Y Li… - BMC Plant …, 2020 - Springer
… in the above GWAS methods as fixed effects in the rrBLUP model is a powerful tool for
KRN prediction, which was a trait-specific consideration in the given population in this study. …

Genome‐wide mapping and prediction of plant architecture in a sorghum nested association mapping population

MO Olatoye, Z Hu, GP Morris - The Plant Genome, 2020 - Wiley Online Library
… , we cross-validated genomic BLUPs of eight traits using two … contrasted genomic prediction
accuracy for vegetative architecture traits with accuracies for inflorescence architecture traits. …

Genetic architecture of maize kernel row number and whole genome prediction

L Liu, Y Du, D Huo, M Wang, X Shen, B Yue… - Theoretical and Applied …, 2015 - Springer
Genome-wide genotyping also permits the improvement of the trait by genomic selection
or whole-genome prediction (WGP), similar to that achieved in cattle breeding. This approach …

Genetic architecture and genomic prediction of plant height-related traits in chrysanthemum

X Zhang, J Su, F Jia, Y He, Y Liao, Z Wang… - Horticulture …, 2024 - academic.oup.com
Plant height (PH) is a crucial trait determining plant architecture in chrysanthemum. To better
understand the genetic basis of PH, we investigated the variations of PH, internode number …

Deep learning versus parametric and ensemble methods for genomic prediction of complex phenotypes

R Abdollahi-Arpanahi, D Gianola… - Genetics Selection …, 2020 - Springer
prediction machines depends on the genetic architecturegenomic prediction of complex
traits and DL does not appear to be a panacea for genome-enabled prediction of complex traits. …

Whole-genome mapping of quantitative trait loci and accuracy of genomic predictions for resistance to columnaris disease in two rainbow trout breeding populations

RMO Silva, JP Evenhuis, RL Vallejo, G Gao… - Genetics Selection …, 2019 - Springer
… provided a prediction accuracy close to zero, due to the binary nature of the trait. Using … the
complete data as benchmark improved prediction accuracy of genomic models by about 40% …