Trait Associations in Diversity Panels of the Two Common Bean (Phaseolus vulgaris L.) Gene Pools Grown under Well-watered and Water-Stress Conditions

A Asfaw, D Ambachew, T Shah, MW Blair - Frontiers in Plant Science, 2017 - frontiersin.org
… pattern of trait associations for a total of 202 common bean genotypes divided into panels
of … dynamics between traits and the relative contribution of adaptive traits to differentiation …

… genome‐wide association study (XP‐GWAS): a method for identifying trait‐associated variants by sequencing pools of individuals selected from a diversity panel

J Yang, H Jiang, CT Yeh, J Yu, JA Jeddeloh… - The Plant …, 2015 - Wiley Online Library
diversity within a species. We wished to extend the NGS-based BSA approach to diversity
panels to more fully sample and interrogate the genetic diversity that controls quantitative traits

An assessment of the performance of the logistic mixed model for analyzing binary traits in maize and sorghum diversity panels

E Shenstone, J Cooper, B Rice, M Bohn, TM Jamann… - PLoS …, 2018 - journals.plos.org
… of identifying statistically significant marker-trait associations in the same genomic regions …
both diversity panels. We also show how subpopulation structure in the maize diversity panel

Genetic diversity and trait genomic prediction in a pea diversity panel

J Burstin, P Salloignon, M Chabert-Martinello… - BMC genomics, 2015 - Springer
… spurious signals of association in the detection of marker-phenotype associations due to
extended linkage disequilibrium [19]. A proper description of diversity and population structure …

Effect of population structure corrections on the results of association mapping tests in complex maize diversity panels

S Mezmouk, P Dubreuil, M Bosio, L Décousset… - Theoretical and applied …, 2011 - Springer
… The model in which the best BIC value is reached depends greatly on the method of structure
estimate and on the analyzed trait: the more the trait is correlated to the panel structure, the …

Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies

SD Nicolas, JP Péros, T Lacombe, A Launay… - BMC plant biology, 2016 - Springer
… in Vassal (France), we designed a diversity panel of 279 cultivars with limited relatedness, …
traits, we showed that our panel adequately captured most of the genetic and phenotypic …

Genome-wide association study of yield components and fibre quality traits in a cotton germplasm diversity panel

W Gapare, W Conaty, QH Zhu, S Liu, W Stiller… - Euphytica, 2017 - Springer
… of significant population structure within the cotton diversity panel we have examined. …
significant marker-trait associations for the bulk of the traits even though the traits were found to be …

A high-resolution association mapping panel for the dissection of complex traits in mice

BJ Bennett, CR Farber, L Orozco, HM Kang… - Genome …, 2010 - genome.cshlp.org
… of metabolic traits such as plasma lipids. This resource, termed the Hybrid Mouse Diversity
Panel, … -based approaches to complex traits and studies of gene-by-environment interactions. …

[HTML][HTML] Genetic analysis and characterization of a new maize association mapping panel for quantitative trait loci dissection

X Yang, J Yan, T Shah, ML Warburton, Q Li, L Li… - Theoretical and Applied …, 2010 - Springer
panel can be used for association mapping analysis targeting multiple agronomic and
quality traits with optimal association … the genetic diversity between P US and our panel (referred …

[HTML][HTML] Dent and Flint maize diversity panels reveal important genetic potential for increasing biomass production

R Rincent, S Nicolas, S Bouchet, T Altmann… - Theoretical and applied …, 2014 - Springer
… of traits related to biomass are poorly known. We analyzed two highly diverse panels of Dent
and … Once these effects are correctly modeled, only marker-trait associations due to linkage …