… nucleosome forms immediately upstream of the transcription … This “fragile” nucleosome (FN)
promoter architecture relies … ) nucleosome remodeler and pioneer transcription factors (PTFs)…

… Our parallel expression profiling compendium revealed extensive transcription … nucleosome
occupancy and positioning. We show that the nucleosome-excluding transcription factors …

… minor groove of DNA on the nucleosome surface, resulting in … exposition of regulatory DNA
architecture that exploits the full … , TF-nucleosome interactions and nucleosome architecture …

… transcription factor access to nucleosomal DNA and relieves inhibitory effects on transcriptional
… the coevolution of DNA with both the architectural proteins that package the double helix …

… nucleosomes two helical turns from the dyad axis and that the Snf6 subunit is proximal to
the transcription factor … the histone octamer and not with nucleosomal DNA. The model of the …

… transcription factor — nucleosome interactions. These include in vitro methods such as
nucleosome … interaction landscape between transcription factors and the nucleosome is very rich …

… Examining the distance to the nearest nucleosome for other sequence-specific transcription
factors, we see that CTCF appears unique in its ability to strongly position flanking …

… cell cycle plasticity of nucleosome architecture around key regions: transcription start/…
nucleosome rearrangements and cell cycle-related dynamics in DNA replication and transcription…

… Specifically, we utilized common glycolytic transcription factor binding sites embedded in
random spacer sequences as the lead designs for our algorithm (Fig. 7a, Supplementary Table …

… To test the roles of these complexes in regulation of transcription factor and chromatin
regulatory factor binding, we focused on the information provided by the small reads (≤80 bp) …