TIP: a probabilistic method for identifying transcription factor target genes from ChIP-seq binding profiles
… used to identify transcription factor (TF) binding sites and target genes. Conventionally, a …
for target gene identification eg finding genes with binding sites within 2 kb of a transcription …
for target gene identification eg finding genes with binding sites within 2 kb of a transcription …
Transcription factor AP2‐Sp and its target genes in malarial sporozoites
M Yuda, S Iwanaga, S Shigenobu, T Kato… - Molecular …, 2010 - Wiley Online Library
… of genes with various functions and expression profiles. Target genes of this TF include all
known genes … We also demonstrated that AP2-Sp induces these target genes by binding to …
known genes … We also demonstrated that AP2-Sp induces these target genes by binding to …
Fifteen‐year quest for microphthalmia‐associated transcription factor target genes
Y Cheli, M Ohanna, R Ballotti… - Pigment cell & …, 2010 - Wiley Online Library
… the MITF-regulated genes. We pay special attention to the MITF target genes in melanocytes
and … of the MITF target genes and to discuss the role of these genes in melanocyte biology. …
and … of the MITF target genes and to discuss the role of these genes in melanocyte biology. …
Identification of target genes of the transcription factor HNF1β and HNF1α in a human embryonic kidney cell line
S Senkel, B Lucas, L Klein-Hitpass, GU Ryffel - Biochimica et Biophysica …, 2005 - Elsevier
… The HNF1β target genes dipeptidyl peptidase 4 (… target genes, as they contain functional
HNF1 binding sites in their promoter region. Since nine of the potential HNF1β target genes are …
HNF1 binding sites in their promoter region. Since nine of the potential HNF1β target genes are …
Genome-wide analysis of repressor element 1 silencing transcription factor/neuron-restrictive silencing factor (REST/NRSF) target genes
… its endogenous target genes. This study highlights the fact that a single transcription factor
can have a highly selective pattern of target gene recruitment within the same cell population. …
can have a highly selective pattern of target gene recruitment within the same cell population. …
Activators and target genes of Rel/NF-κB transcription factors
HL Pahl - Oncogene, 1999 - nature.com
… This article lists and categorizes the known inducers and target genes of the pleiotropic
transcription factor NF-κB known to date. Compilation of these data reveals that the vast majority …
transcription factor NF-κB known to date. Compilation of these data reveals that the vast majority …
Transcription factor regulation can be accurately predicted from the presence of target gene signatures in microarray gene expression data
A Essaghir, F Toffalini, L Knoops, A Kallin… - Nucleic acids …, 2010 - academic.oup.com
… TFactS predicted the specific activation of Signal transducer and activator of transcription …
of transcription factor target genes constitute a robust signature for transcription factor regulation…
of transcription factor target genes constitute a robust signature for transcription factor regulation…
Estimating the activity of transcription factors by the effect on their target genes
T Schacht, M Oswald, R Eils, SB Eichmüller… - …, 2014 - academic.oup.com
… in differentiation, neurogenesis, embryogenesis), interferon regulatory factor 3 (IRF3) and
sterol regulatory element binding transcription factor 1 (SREBF1). In summary, besides a …
sterol regulatory element binding transcription factor 1 (SREBF1). In summary, besides a …
[HTML][HTML] Target Genes of the MADS Transcription Factor SEPALLATA3: Integration of Developmental and Hormonal Pathways in the Arabidopsis Flower
… transcription factor families in SEP3 target gene regulation. In addition to effects on genes
… , and modulates, the transcription of target genes involved in hormonal signaling pathways. …
… , and modulates, the transcription of target genes involved in hormonal signaling pathways. …
Target Explorer: An automated tool for the identification of new target genes for a specified set of transcription factors
A Sosinsky, CP Bonin, RS Mann… - Nucleic acids …, 2003 - academic.oup.com
… target genes for transcription factors and groups of factors To start a new search for target
genes for an individual transcription factor … cluster for each transcription factor and the maximal …
genes for an individual transcription factor … cluster for each transcription factor and the maximal …
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