Salt-induced transcription factor MYB74 is regulated by the RNA-directed DNA methylation pathway in Arabidopsis

R Xu, Y Wang, H Zheng, W Lu, C Wu… - Journal of …, 2015 - academic.oup.com
Transcription factors and RNA-directed DNA methylation (RdDM) play an important role in …
upstream of the transcription initiation site of AtMYB74, which is heavily methylated. Levels of …

Pan-cancer predictions of transcription factors mediating aberrant DNA methylation

D Detilleux, YG Spill, D Balaramane, M Weber… - Epigenetics & …, 2022 - Springer
… predict transcription factors that lead to hyper-methylated regions upon transcription factor
loss … Finally, we validate that FOXA1 and GATA3 mediate hypo-methylated regions in breast …

Genome-wide DNA methylation profiles in hematopoietic stem and progenitor cells reveal overrepresentation of ETS transcription factor binding sites

A Hogart, J Lichtenberg, SS Ajay, S Anderson… - Genome …, 2012 - genome.cshlp.org
… of transcription factors and methylation To further investigate the relationship between DNA
methylation and transcription factortranscription factor motifs. Table 4 contains a list of all …

Impact of cytosine methylation on DNA binding specificities of human transcription factors

Y Yin, E Morgunova, A Jolma, E Kaasinen, B Sahu… - Science, 2017 - science.org
factors to DNA—in some cases negatively and in others positively. Our finding … transcription
factors prefer to bind to mCpG sites can inform future analyses of the role of DNA methylation

DNA methylation: old dog, new tricks?

CG Spruijt, M Vermeulen - Nature structural & molecular biology, 2014 - nature.com
… of transcription. This is evidenced by the fact that transcription factors can interact with methylated
DNA … This paper shows that the transcription factor C/EBPα binds to a methylated CRE …

How does DNA methylation repress transcription?

SU Kass, D Pruss, AP Wolffe - Trends in Genetics, 1997 - cell.com
… ) bind less well to methylated recognition elements; however, the … that DNA methylation would
function to repress transcriptiontranscription factors. The second possibility is that specific …

A global DNA methylation and gene expression analysis of early human B-cell development reveals a demethylation signature and transcription factor network

ST Lee, Y Xiao, MO Muench, J Xiao… - Nucleic acids …, 2012 - academic.oup.com
… We examined DNA methylation and RNA expression status during early B-cell … DNA
methylation scanning and expression arrays. Features of promoter and gene body DNA methylation

Regulation of UGT1A1 and HNF1 transcription factor gene expression by DNA methylation in colon cancer cells

AS Bélanger, J Tojcic, M Harvey, C Guillemette - BMC molecular biology, 2010 - Springer
DNA methylation may repress transcription by sterically hindering the binding of activating
transcription factors … Similarly, treatment with DNA methylation inhibitors enable binding of …

Analysis method of epigenetic DNA methylation to dynamically investigate the functional activity of transcription factors in gene expression

W Feng, Z Dong, B He, K Wang - BMC genomics, 2012 - Springer
… profiling in gene promoter regions, we present a method to investigate transcription factors
that are affected by DNA methylation and that are functionally active in gene expression. …

Breaking the silence: the interplay between transcription factors and DNA methylation

B Baron - 2012 - um.edu.mt
Methylation of the CpG at the centre of the CRE sequence inhibits transcription, by inhibiting
transcription factor binding, indicating that methylation at specific CpG sites can contribute …