[PDF][PDF] Automated essay scoring based on finite state transducer: towards ASR transcription of oral English speech
X Peng, D Ke, B Xu - Proceedings of the 50th Annual Meeting of …, 2012 - aclanthology.org
… (stands for the conventional measures), our FST method … Here, we apply the edit distance
to measure how best the path … edit distance compared with the to-be-scored transcription’s …
to measure how best the path … edit distance compared with the to-be-scored transcription’s …
TransRate: reference-free quality assessment of de novo transcriptome assemblies
… little or no change following removal of low scoring transcripts, … Our method is focused on a
clear definition of an optimal de … a maximum edit distance of 5 from the best-scoring alignment …
clear definition of an optimal de … a maximum edit distance of 5 from the best-scoring alignment …
Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs
B Chevreux, T Pfisterer, B Drescher, AJ Driesel… - Genome …, 2004 - genome.cshlp.org
… in reconstruction of pristine mRNA transcripts, while at the … methods and algorithms leads
to a system that accomplishes … detection, analysis, and classification of SNPs prevents grave …
to a system that accomplishes … detection, analysis, and classification of SNPs prevents grave …
Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts
… transcripts and sense–antisense pairs. The implementation of CNCI offered highly accurate
classification of transcripts … is not because of the classification method per se , but the …
classification of transcripts … is not because of the classification method per se , but the …
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
… transcription and splicing. Here we introduce such algorithms in an open-source software
program called … However, trajectory classification was not precise enough to prioritize further …
program called … However, trajectory classification was not precise enough to prioritize further …
PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme
… We demonstrated the utility of PLEK on transcripts from other … ) algorithm was used to build
a binary classification model to … the data used to build the classification model and to test its …
a binary classification model to … the data used to build the classification model and to test its …
Speech disorders classification in phonetic exams with MFCC and DTW
… the phonetic transcription of the corresponding word by the full IPA keyboard. We employed
the Levenshtein distance algorithm (Edit distance) with the cost to calculate the distance …
the Levenshtein distance algorithm (Edit distance) with the cost to calculate the distance …
[PDF][PDF] CLICK: a clustering algorithm with applications to gene expression analysis
… This allows for the first time a global view on the transcription levels of many (or all) genes
… For the evaluation of the ProtoMap dataset we used a Pfam classification for a subset of the …
… For the evaluation of the ProtoMap dataset we used a Pfam classification for a subset of the …
CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model
… free method, Coding Potential Assessment Tool (CPAT), which rapidly recognizes coding and
noncoding transcripts from … This feature also has good classification power, and it is highly …
noncoding transcripts from … This feature also has good classification power, and it is highly …
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis
G Östlund, T Schmitt, K Forslund, T Köstler… - Nucleic acids …, 2010 - academic.oup.com
… To prevent different transcripts of the same gene from being assigned to different ortholog
… homology detection tool. As BLAST is a local alignment algorithm, high-scoring matches …
… homology detection tool. As BLAST is a local alignment algorithm, high-scoring matches …