Comparative transcriptomic analysis reveals gene expression associated with cold adaptation in the tea plant Camellia sinensis

Y Li, X Wang, Q Ban, X Zhu, C Jiang, C Wei… - BMC genomics, 2019 - Springer
transcriptomes via high through-put RNA-Seq analysis of tea … resistance, we compared the
transcriptomes in two tea varieties… of two DEGs from the comparison CA_vs_ CS in SCZ were …

Exploring the genetic basis of adaptation to high elevations in reptiles: a comparative transcriptome analysis of two toad-headed agamas (genus Phrynocephalus)

W Yang, Y Qi, J Fu - PLoS One, 2014 - journals.plos.org
adaptation offers an excellent study system to understand the genetic basis of adaptive
evolution. We acquired transcriptome … A comparison between them may reveal the genetic basis …

Comprehensive transcriptome analysis of six catfish species from an altitude gradient reveals adaptive evolution in Tibetan fishes

X Ma, W Dai, J Kang, L Yang… - G3: Genes, Genomes …, 2016 - academic.oup.com
… Our analyses provide novel insights into highland adaptation … underlying the genetic basis
of adaptation in Tibetan fishes. … of positive selection by comparing their transcriptomes. The …

Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome‐wide digital gene expression analysis

TL Lenz, C Eizaguirre, B Rotter, M Kalbe… - Molecular …, 2013 - Wiley Online Library
… local adaptation in natural populations. Here, we use next-generation sequencing technology
to compare the transcriptome-… By comparing overall gene expression levels as well as the …

Comparative analysis of the transcriptome across distant species

MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng… - Nature, 2014 - nature.com
comparison of the transcriptomescomparing divergent model organisms to human to
highlight conserved biological principles (and disentangle them from lineage-specific adaptations). …

Adaptation and evolution of deep-sea scale worms (Annelida: Polynoidae): insights from transcriptome comparison with a shallow-water species

Y Zhang, J Sun, C Chen, HK Watanabe, D Feng… - Scientific Reports, 2017 - nature.com
… data, we conducted phylogenetic and evolutionary analyses of hemoglobins in deep-sea
scale worms. This group of proteins function in oxygen binding, and could be important in the …

Transcriptome analysis of ruminal epithelia revealed potential regulatory mechanisms involved in host adaptation to gradual high fermentable dietary transition in beef …

K Zhao, YH Chen, GB Penner, M Oba, LL Guan - BMC genomics, 2017 - Springer
… The DG and UG heifers were then selected for further transcriptome comparison to identify
the genes that may be associated with the potential molecular mechanisms behind such …

Investigating the molecular basis of local adaptation to thermal stress: population differences in gene expression across the transcriptome of the copepod Tigriopus …

SD Schoville, FS Barreto, GW Moy, A Wolff… - BMC evolutionary …, 2012 - Springer
… a comparison of the San Diego and Santa Cruz transcriptomes [38]. The orthologous pair
with the largest amount of sequence divergence in our analysis (… the entire transcriptome [38]. …

Comparative analysis of proteome and transcriptome variation in mouse

A Ghazalpour, B Bennett, VA Petyuk, L Orozco… - PLoS …, 2011 - journals.plos.org
… In this analysis, in order to make a direct comparison across … -pair analysis, we also carried
a similar analysis at the gene … ) following manufacturer's protocol with adaptations for use with …

Transcriptome analysis of the plateau fish (Triplophysa dalaica): Implications for adaptation to hypoxia in fishes

Y Wang, L Yang, B Wu, Z Song, S He - Gene, 2015 - Elsevier
… To assess the quality of our assembled unigenes, we made comparisons with other fish
transcriptomes sequenced within Cypriniformes, Carassius auratus, Megalobrama amblycephala…