Comparative physiology and transcriptome analysis reveals the regulatory mechanism of genome duplication enhancing cold resistance in Fragaria nilgerrensis

J Liu, J Li, C Fu - Environmental and experimental botany, 2021 - Elsevier
… in plant adaption to adverse environments, but the mechanism by which polyploidization
confers adaptation to … , four pairwise transcriptome comparisons (DM vs. DH, DL vs. DH, TM vs. …

Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress

T Horinouchi, K Tamaoka, C Furusawa, N Ono… - BMC genomics, 2010 - Springer
… growth rate in comparison with their ancestor. Expression analysis using microarrays …
be performed to clarify the relationship between the adaptation to ethanol and the change in …

Exploring the molecular basis of adaptive evolution in hydrothermal vent crab Austinograea alayseae by transcriptome analysis

M Hui, C Song, Y Liu, C Li, Z Cui - PLoS One, 2017 - journals.plos.org
transcriptome provides abundant resources for genetic and evolutionary studies of this
species, and paves the way for further investigation of vent adaptation … , our comparison results …

Comparative transcriptome profiling of chilling stress responsiveness in two contrasting rice genotypes

T Zhang, X Zhao, W Wang, Y Pan, L Huang, X Liu… - 2012 - journals.plos.org
… In this study, parallel transcriptomic analysis in two rice … of environmental stress adaptation
mechanisms and thereby assist … In total, 240 comparisons were made, as the expression of …

Transcriptome analysis identified long non-coding RNAs involved in the adaption of yak to high-altitude environments

JW Xin, ZX Chai, CF Zhang… - Royal Society …, 2020 - royalsocietypublishing.org
… Based on cis-regulated target genes, KEGG enrichment analysis revealed no significantly
… enrichment analysis significantly revealed 4, 15, 3 and 11 KEGG pathways in comparisons

Analysis of comparative transcriptome and positively selected genes reveal adaptive evolution in leaf-less and root-less whisk ferns

Z Xia, L Liu, Z Wei, F Wang, H Shen, Y Yan - Plants, 2022 - mdpi.com
… In addition, the comparison between fossils of the most … functional requirements and
adaption to specific environments. … genes showing signs of adaption to epiphytic environments. …

Transcriptome Analysis of Enterococcus faecalis during Mammalian Infection Shows Cells Undergo Adaptation and Exist in a Stringent Response State

KL Frank, C Colomer-Winter, SM Grindle, JA Lemos… - PloS one, 2014 - journals.plos.org
… Paired t-tests comparing the cDNA/gDNA ratio for each gene in each time point analysis (ie,
0 versus 2 hours, 0 versus 8 hours) were performed. Results were filtered for genes showing …

Comparative analysis of drought‐responsive transcriptome in Indica rice genotypes with contrasting drought tolerance

SK Lenka, A Katiyar, V Chinnusamy… - Plant biotechnology …, 2011 - Wiley Online Library
… basis of stress adaptation mechanisms, facilitating thereby … mechanism of reprogramming
of transcriptome in response to … Comparison of the expression levels of transcriptome under …

Transcriptome Changes in Eriocheir sinensis Megalopae after Desalination Provide Insights into Osmoregulation and Stress Adaption in Larvae

M Hui, Y Liu, C Song, Y Li, G Shi, Z Cui - PloS one, 2014 - journals.plos.org
… stress induced adaptions. This study provides the first genome-wide transcriptome analysis
of E… The MB and MA datasets were analyzed separately for further comparison and ultimately …

Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing

SU Franssen, RP Shrestha, A Bräutigam… - BMC genomics, 2011 - Springer
… pea, resulted in 450 Megabases of transcriptome sequence derived from above-ground
organs of pea. Comparison to Arabidopsis and mathematical analysis showed that the transcript …