Whole-genome and transcriptome sequencing of prostate cancer identify new genetic alterations driving disease progression

S Ren, GH Wei, D Liu, L Wang, Y Hou, S Zhu, L Peng… - European urology, 2018 - Elsevier
… We next analyzed transcriptome sequencing data of the … regions with corresponding
transcriptome sequencing reads. We … by the transcriptome sequencing reads, these sequencing

Whole transcriptome sequencing reveals extensive unspliced mRNA in metastatic castration-resistant prostate cancer

AG Sowalsky, Z Xia, L Wang, H Zhao, S Chen… - Molecular Cancer …, 2015 - AACR
… normal prostate epithelium, untreated primary prostate cancer, and cultured prostate cancer
… Implications: Inefficient splicing in advanced prostate cancer provides a selective advantage …

Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer

C Wu, AW Wyatt, AV Lapuk, A McPherson… - The Journal of …, 2012 - Wiley Online Library
… Despite a homogeneous cell type, our transcriptome … highly aggressive case of prostate
cancer with unique biological … and transcriptome sequences for basic tumour biology, sequence

Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression

JR Prensner, MK Iyer, OA Balbin… - Nature …, 2011 - nature.com
… To pursue this hypothesis, we applied transcriptome sequencing on a cohort of 102 prostate
… ), 47 localized prostate cancers (PCA), 14 metastatic tumors and 21 prostate cell lines. From …

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach

MN Bainbridge, RL Warren, M Hirst, T Romanuik… - BMC genomics, 2006 - Springer
… We present the utility of massively parallel sequencing by synthesis for profiling the
transcriptome of a human prostate cancer cell-line, LNCaP, that has been treated with the synthetic …

Whole exome and transcriptome RNA-sequencing model for the diagnosis of prostate cancer

JB Nikas, NT Mitanis, EG Nikas - ACS omega, 2019 - ACS Publications
… for the diagnosis of prostate cancer, which is predicated … transcriptome RNA-sequencing
(RNA-seq) data that were derived from 468 tumor samples and 51 normal samples of prostatic

Transcriptome Sequencing Reveals PCAT5 as a Novel ERG-Regulated Long Noncoding RNA in Prostate Cancer

A Ylipää, K Kivinummi, A Kohvakka, M Annala… - Cancer research, 2015 - AACR
… , small RNAs and lncRNAs in these prostate cancers, we deep-sequenced transcriptomes
of 12 benign prostatic hyperplasias (BPH), 28 untreated prostate cancers, and 13 CRPCs. In …

Dynamic prostate cancer transcriptome analysis delineates the trajectory to disease progression

M Bolis, D Bossi, A Vallerga, V Ceserani… - Nature …, 2021 - nature.com
… and generate a comprehensive prostate cancer transcriptome atlas that describes the …
Prostate Cancer Transcriptome Atlas can infer or validate new therapeutic avenues for cancer

[HTML][HTML] Transcriptome sequencing identifies PCAT-1, a novel lincRNA implicated in prostate cancer progression

JR Prensner, MK Iyer, OA Balbin… - Nature …, 2011 - ncbi.nlm.nih.gov
… We hypothesized that prostate cancer similarly harbored … employed transcriptome sequencing
on a cohort of 102 prostate … (MET) and 21 prostate cell lines). From a total of 1.723 billion …

Transcriptome sequencing to detect gene fusions in cancer

CA Maher, C Kumar-Sinha, X Cao… - Nature, 2009 - nature.com
… cDNA libraries of the prostate cancer cell line VCaP, … transcriptome sequencing to identify
novel gene fusions, we generated non-normalized cDNA libraries from the prostate cancer