The DNA methylation landscape of advanced prostate cancer

SG Zhao, WS Chen, H Li, A Foye, M Zhang… - Nature …, 2020 - nature.com
… of 100 castration-resistant prostate metastases, we … and whole-transcriptome sequencing in
metastatic cancer that provides … methylation in metastatic castration-resistant prostate cancer. …

Recurrent chimeric RNAs enriched in human prostate cancer identified by deep sequencing

K Kannan, L Wang, J Wang… - Proceedings of the …, 2011 - National Acad Sciences
… expressed in prostate cancer, we sequenced the transcriptome of 20 cancer samples and
… Our results from three different analyses, (i) transcriptome sequencing of human cancer and …

RNA-Seq of single prostate CTCs implicates noncanonical Wnt signaling in antiandrogen resistance

DT Miyamoto, Y Zheng, BS Wittner, RJ Lee, H Zhu… - Science, 2015 - science.org
… , we also obtained comprehensive transcriptomes for bulk primary prostate cancers from
a … ), 30 single cells derived from four different prostate cancer cell lines, and five patient-derived …

Transcriptome-wide prediction of prostate cancer gene expression from histopathology images using co-expression-based convolutional neural networks

P Weitz, Y Wang, K Kartasalo, L Egevad… - …, 2022 - academic.oup.com
… We conducted the first transcriptome-wide analysis in prostate cancer, using CNNs to predict
bulk RNA-sequencing estimates from WSIs for 370 patients from the TCGA PRAD study. …

Transcriptome‐Wide Detection of Differentially Expressed Coding and Non‐Coding Transcripts and Their Clinical Significance in Prostate Cancer

N Erho, C Buerki, TJ Triche, E Davicioni… - Journal of …, 2012 - Wiley Online Library
… in a transcriptome-wide level. In this study, we use a publicly available dataset of normal
adjacent, primary tumor, and metastatic prostate cancertranscriptome of prostate cancer [10]. …

Transcriptome subtyping of metastatic Castration Resistance Prostate Cancer (mCRPC) for the precision therapeutics: An in silico analysis

Y Liang, E Rong, J Qian, C Ma, J Hu - Prostate Cancer and Prostatic …, 2022 - nature.com
… The consistency of clustering between primary prostate cancers and mCRPCs highlights
the robustness of our clustering approach and suggests that prostate cancers maintain …

Atlas of dihydrotestosterone actions on the transcriptome of prostate in vivo

C Ma, M Yoshioka, A Boivin, L Gan, Y Takase… - … Prostate, 2009 - Wiley Online Library
… In order to explore the role of ARGs in human prostate cancer cell growth, we have
knockdowned AMD1 by 81% using siRNA in the LNCaP cells (Table X). As seen after AR siRNA …

[HTML][HTML] Suitability of ultrasound-guided fine-needle aspiration biopsy for transcriptome sequencing of the canine prostate

H Thiemeyer, L Taher, JT Schille, L Harder… - Scientific reports, 2019 - nature.com
… for both cytological diagnosis and whole transcriptome RNA-sequencing analysis (RNA-Seq),
with the ultimate aim of improving canine prostate cancer management. The feasibility of …

102. Elucidating the genomic landscape of Prostate Adenocarcinoma through whole genome and transcriptome sequencing

M Melas, H Geiger, ST Srinivasa, S Guha, V Felice… - Cancer Genetics, 2022 - Elsevier
… cases, RNA sequencing revealed the same known prostate cancer fusion, … cancer type
which could only be identified by WGTS, and with different therapeutic options for the same cancer

Whole-genome sequence of the metastatic PC3 and LNCaP human prostate cancer cell lines

I Seim, PL Jeffery, PB Thomas… - G3: Genes …, 2017 - academic.oup.com
… In addition, transcriptome data from normal prostate samples were obtained from TCGA (see
above). Briefly, paired-end reads were trimmed using scythe, and aligned to human …