102. Elucidating the genomic landscape of Prostate Adenocarcinoma through whole genome and transcriptome sequencing
M Melas, H Geiger, ST Srinivasa, S Guha, V Felice… - Cancer Genetics, 2022 - Elsevier
… cases, RNA sequencing revealed the same known prostate cancer fusion, … cancer type
which could only be identified by WGTS, and with different therapeutic options for the same cancer…
which could only be identified by WGTS, and with different therapeutic options for the same cancer…
Whole-genome sequence of the metastatic PC3 and LNCaP human prostate cancer cell lines
… In addition, transcriptome data from normal prostate samples were obtained from TCGA (see
above). Briefly, paired-end reads were trimmed using scythe, and aligned to human …
above). Briefly, paired-end reads were trimmed using scythe, and aligned to human …
The impact of genomic alterations on the transcriptome: a prostate cancer cell line case study
J Chaudhary, M Schmidt - Chromosome Research, 2006 - Springer
… transcriptome of prostate cancer cell line DU145. The genomic loss/gain map obtained through
BAC array-based CGH was superimposed on the dynamic transcriptome … prostate cancer…
BAC array-based CGH was superimposed on the dynamic transcriptome … prostate cancer…
[HTML][HTML] Transcriptome sequencing reveals altered long intergenic non-coding RNAs in lung cancer
… Transcriptome sequencing, or RNA-Seq, offers an unbiased approach for annotating …
in a cohort of 102 prostate cancer patients, of which 121 were associated with progression [6]. …
in a cohort of 102 prostate cancer patients, of which 121 were associated with progression [6]. …
Abstract A029: Whole genome and transcriptome analysis of paired metastatic biopsies identified resistance mechanisms in castration-resistant prostate cancer
… We performed whole-genome sequencing (WGS) and RNA-seq on these samples and …
sequencing data of transcription factors known to be important in prostate cancer (AR, FOXA1, …
sequencing data of transcription factors known to be important in prostate cancer (AR, FOXA1, …
Genome and transcriptome sequencing in prospective metastatic triple-negative breast cancer uncovers therapeutic vulnerabilities
… Here, we present initial analyses of whole genome and transcriptome sequencing data from
14 prospective mTNBC. We have cataloged the collection of somatic genomic alterations in …
14 prospective mTNBC. We have cataloged the collection of somatic genomic alterations in …
[HTML][HTML] Integrative comparison of the genomic and transcriptomic landscape between prostate cancer patients of predominantly African or European genetic ancestry
… We report substantial heterogeneity in the prostate tumor genome and transcriptome between
EA and AA. These differences may be biological contributors to racial disparities in CaP …
EA and AA. These differences may be biological contributors to racial disparities in CaP …
[HTML][HTML] Integration of metabolomics and transcriptomics reveals major metabolic pathways and potential biomarker involved in prostate cancer
… ), which were correlated with tumor grade, stage, and preoperative prostate-specific antigen
(PSA) levels. Transcriptome sequencing across a PCa cohort identified that PCAT-1 was …
(PSA) levels. Transcriptome sequencing across a PCa cohort identified that PCAT-1 was …
CTPC, a combined transcriptome data set of human prostate cancer cell lines
… Prostate cancer (PCa) is one of the most common cancers in American men and the
second leading cause of cancer-related deaths. Cell line models are commonly used in PCa …
second leading cause of cancer-related deaths. Cell line models are commonly used in PCa …
[HTML][HTML] … of unique PMEPA1 gene splice variants (isoforms d and e) from RNA Seq profiling provides novel insights into prognostic evaluation of prostate cancer
… Prostate cancer is a disease with heterogeneity of multiple gene transcriptomes and …
VCaP, LNCaP cells and human prostate cancer samples from The Cancer Genome Atlas (TCGA) …
VCaP, LNCaP cells and human prostate cancer samples from The Cancer Genome Atlas (TCGA) …