Measuring and interpreting transposable element expression

S Lanciano, G Cristofari - Nature Reviews Genetics, 2020 - nature.com
Transposable elements (TEs) are mobile genetic elements … made between retrotransposons
and DNA transposons (Fig. 1)… for DNA transposons — it enables expression of transposase, …

Transposable element influences on gene expression in plants

CD Hirsch, NM Springer - Biochimica et Biophysica Acta (BBA)-Gene …, 2017 - Elsevier
… Throughout this review we will often collectively refer to all transposable elements as TEs. …
[3] provided an excellent classification scheme for transposable elements. Briefly, TEs are …

[HTML][HTML] Transposable elements as essential elements in the control of gene expression

A Gebrie - Mobile DNA, 2023 - Springer
… of families of transposable elements [21]. Also, transposable elements have a significant role
… In cancer and other inflammatory disorders, the expression of transposon elements triggers …

[HTML][HTML] Transposable element expression in tumors is associated with immune infiltration and increased antigenicity

Y Kong, CM Rose, AA Cass, AG Williams… - Nature …, 2019 - nature.com
… this is the reactivation of transposable elements (TEs) which could … genome-wide TE expression
in RNA sequencing data. Using … gene expression by DNA transposons in many cancers. …

[HTML][HTML] Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression

ML Bendall, M De Mulder, LP Iñiguez… - PLoS computational …, 2019 - journals.plos.org
transposable element (TE) expression, and found that Telescope has the greatest resolution,
as it estimates expression at … complexity in the transposable element biology of complex …

Transposable elements in cancer

KH Burns - Nature Reviews Cancer, 2017 - nature.com
… Altered expression of transposable elements and animation of genomic LINE-1
sequences appear to be hallmarks of cancer, and can be responsible for driving mutations in …

Transposable element small RNAs as regulators of gene expression

AD McCue, RK Slotkin - Trends in genetics, 2012 - cell.com
Transposable elements (TEs) are a source of endogenous small RNAs in animals and plants.
These TE-derived small RNAs have been traditionally treated as functionally distinct from …

Transposable elements drive widespread expression of oncogenes in human cancers

HS Jang, NM Shah, AY Du, ZZ Dailey, EC Pehrsson… - Nature …, 2019 - nature.com
Transposable elements (TEs) are an abundant and rich genetic resource of regulatory
sequences 1,2,3 . Cryptic regulatory elements … of the TE eliminated oncogene expression, while …

[HTML][HTML] Roles of transposable elements in the different layers of gene expression regulation

D Drongitis, F Aniello, L Fucci, A Donizetti - International Journal of …, 2019 - mdpi.com
… strategies to control their expression [38]. However, transposable elements are also emerging
as an important source of epigenetic marks that can influence gene expression, leading to …

[HTML][HTML] Expressing genes do not forget their LINEs: transposable elements and gene expression

KJ Kines, VP Belancio - Frontiers in bioscience: a journal and …, 2012 - ncbi.nlm.nih.gov
… effects on gene expression have not received much … expression gained significant interest
after the discoveries that the majority of transposable elements either carry cis-acting elements