RepeatModeler2 for automated genomic discovery of transposable element families
… annotation of genome components such as transposable elements (TEs). Because the types
and … models representing all of the unique TE families dispersed in the genome. Here we …
and … models representing all of the unique TE families dispersed in the genome. Here we …
Methodologies for the De novo Discovery of Transposable Element Families
JM Storer, R Hubley, J Rosen, AFA Smit - Genes, 2022 - mdpi.com
The discovery and characterization of transposable element (TE) families are crucial tasks
in the process of genome annotation. Careful curation of TE libraries for each organism is …
in the process of genome annotation. Careful curation of TE libraries for each organism is …
The Dfam community resource of transposable element families, sequence models, and genome annotations
J Storer, R Hubley, J Rosen, TJ Wheeler, AF Smit - Mobile DNA, 2021 - Springer
… sequence models, transposable element protein alignments, and a … new de novo generated
transposable element families from 336 … de novo generated transposable element datasets. …
transposable element families from 336 … de novo generated transposable element datasets. …
Transposable elements
MG Kidwell - The evolution of the genome, 2005 - Elsevier
… of the P element family in 1982 was preceded by more than a decade of work on the
phenotypic manifestations and phenomenology of this element family in natural populations of D. …
phenotypic manifestations and phenomenology of this element family in natural populations of D. …
相关搜索
- transposable element families genome
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Families of transposable elements, population structure and the origin of species
… genomes harbor diverse families of repetitive DNA derived from transposable elements (TEs…
genomes and the origin of repetitive families often correlates with speciation events. We …
genomes and the origin of repetitive families often correlates with speciation events. We …
Curation Guidelines for de novo Generated Transposable Element Families
JM Storer, R Hubley, J Rosen, AFA Smit - Current protocols, 2021 - Wiley Online Library
… Examples of structural features are the terminal inverted repeats (TIRs) of some DNA
transposable elements and the fixed length of target-site duplications (TSDs) for LTR/ERV families. …
transposable elements and the fixed length of target-site duplications (TSDs) for LTR/ERV families. …
Sequence divergence within transposable element families in the Drosophila melanogaster genome
E Lerat, C Rizzon, C Biémont - Genome research, 2003 - genome.cshlp.org
… transposable element families. In this study,we analyzed the 624 copies of 22 transposable
element (TE) families (… non-LTR retrotransposons, and three transposons). LTR and non-LTR …
element (TE) families (… non-LTR retrotransposons, and three transposons). LTR and non-LTR …
Transposable elements and the evolution of genome size in eukaryotes
MG Kidwell - Genetica, 2002 - Springer
… In summary, for the five small genomes, the number of transposable element families is quite
variable. However, contrary to the earlier claim (International Human Genome Sequencing …
variable. However, contrary to the earlier claim (International Human Genome Sequencing …
Structural and sequence diversity of eukaryotic transposable elements
KK Kojima - Genes & Genetic Systems, 2019 - jstage.jst.go.jp
… that primarily originate from transpositional bursts of transposable elements (TEs). Repbase
… In general, hAT families encode a single protein that includes a transposase domain. TIRs …
… In general, hAT families encode a single protein that includes a transposase domain. TIRs …
DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape
… Transposable element (TE)-derived sequences comprise half … For each TE family, we identified
individual copies that were … of TE families and the coordinates of individual elements are …
individual copies that were … of TE families and the coordinates of individual elements are …