[HTML][HTML] A multi-scale pipeline linking drug transcriptomics with pharmacokinetics predicts in vivo interactions of tuberculosis drugs
JM Cicchese, A Sambarey, D Kirschner… - Scientific Reports, 2021 - nature.com
… a multi-scale pipeline combining two cutting-edge computational approaches, operating at
different biological scales, to evaluate combination therapies using drug transcriptomics and …
different biological scales, to evaluate combination therapies using drug transcriptomics and …
[HTML][HTML] A multi-pronged computational pipeline for prioritizing drug target strategies for latent tuberculosis
… In this work, we have used a systems biology based computational pipeline to strategically
identify six different potential drug targets for tackling latent TB. We further select three of …
identify six different potential drug targets for tackling latent TB. We further select three of …
Development and analysis of multiscale models for tuberculosis: from molecules to populations
… An overview of our TB treatment simulation pipeline using a pharmacokinetics (PK)/pharmacodynamics
(PD) model incorporated into GranSim, our multiscale model that simulates TB …
(PD) model incorporated into GranSim, our multiscale model that simulates TB …
[HTML][HTML] A multi-level multi-scale approach to study essential genes in Mycobacterium tuberculosis
… The figure represents the pipeline that has been followed in this study to identify essential
genes. Four different methods have been applied independently to filter probable candidates …
genes. Four different methods have been applied independently to filter probable candidates …
The present state of the tuberculosis drug development pipeline
MDJ Libardo, HIM Boshoff, CE Barry III - Current opinion in pharmacology, 2018 - Elsevier
… Herein, we discuss recent advances in all stages of TB drug development, starting from hit
… of drugs in TB granulomas and how they relate to clinically observed treatment failures and …
… of drugs in TB granulomas and how they relate to clinically observed treatment failures and …
Multiscale Modeling of Tuberculosis Disease and Treatment to Optimize Antibiotic Regimens
J Cicchese - 2020 - deepblue.lib.umich.edu
… 40 Figure 3.1 Overview of our multiscale pipeline to predict in vivo drug … a multi-scale
computational model that serves as a tool to integrate the PK and disease variability, PD drug …
computational model that serves as a tool to integrate the PK and disease variability, PD drug …
A multi-step and multi-scale bioinformatic protocol to investigate potential SARS-CoV-2 vaccine targets
… Here we describe a multi-step and multi-scale bioinformatic … used for vaccine formulations
against tuberculosis (TB) [15]. We … Here, we propose a vaccine discovery in silico trial pipeline …
against tuberculosis (TB) [15]. We … Here, we propose a vaccine discovery in silico trial pipeline …
[PDF][PDF] Multi-scale system pharmacology modelling pipeline to assess the prophylactic efficacy of NRTIs against HIV-1
MS Duwal, MV Sunkara, MM von Kleist - J Infect Dis, 2009 - paganz.org
… drug resistance), our primary focus was to build a modular multiscale system pharmacology
modelling pipeline … Moreover, the pipeline allows to translate in vitro testable parameters to …
modelling pipeline … Moreover, the pipeline allows to translate in vitro testable parameters to …
Multiscale modeling in the clinic: drug design and development
… to pharmacology, especially in drug development, drug design and drug delivery. Therefore,
… clinical translation of drug development, drug design and drug delivery multiscale models. …
… clinical translation of drug development, drug design and drug delivery multiscale models. …
[HTML][HTML] Systems-level modeling of mycobacterial metabolism for the identification of new (multi-) drug targets
RA Rienksma, M Suarez-Diez, L Spina… - Seminars in …, 2014 - Elsevier
… anti-TB drugs with known metabolic targets. Table 5 provides an overview of the predicted
phenotypes after drug … the modules of a larger multi-scale modeling framework that connects a …
phenotypes after drug … the modules of a larger multi-scale modeling framework that connects a …
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