[HTML][HTML] A multi-scale pipeline linking drug transcriptomics with pharmacokinetics predicts in vivo interactions of tuberculosis drugs

JM Cicchese, A Sambarey, D Kirschner… - Scientific Reports, 2021 - nature.com
… a multi-scale pipeline combining two cutting-edge computational approaches, operating at
different biological scales, to evaluate combination therapies using drug transcriptomics and …

[HTML][HTML] A multi-pronged computational pipeline for prioritizing drug target strategies for latent tuberculosis

U Banerjee, S Sankar, A Singh, N Chandra - Frontiers in chemistry, 2020 - frontiersin.org
… In this work, we have used a systems biology based computational pipeline to strategically
identify six different potential drug targets for tackling latent TB. We further select three of …

Development and analysis of multiscale models for tuberculosis: from molecules to populations

P Nanda, M Budak, CT Michael, K Krupinsky… - Predicting Pandemics in …, 2024 - Springer
… An overview of our TB treatment simulation pipeline using a pharmacokinetics (PK)/pharmacodynamics
(PD) model incorporated into GranSim, our multiscale model that simulates TB …

[HTML][HTML] A multi-level multi-scale approach to study essential genes in Mycobacterium tuberculosis

S Ghosh, P Baloni, S Mukherjee, P Anand… - BMC Systems …, 2013 - Springer
… The figure represents the pipeline that has been followed in this study to identify essential
genes. Four different methods have been applied independently to filter probable candidates …

The present state of the tuberculosis drug development pipeline

MDJ Libardo, HIM Boshoff, CE Barry III - Current opinion in pharmacology, 2018 - Elsevier
… Herein, we discuss recent advances in all stages of TB drug development, starting from hit
… of drugs in TB granulomas and how they relate to clinically observed treatment failures and …

Multiscale Modeling of Tuberculosis Disease and Treatment to Optimize Antibiotic Regimens

J Cicchese - 2020 - deepblue.lib.umich.edu
… 40 Figure 3.1 Overview of our multiscale pipeline to predict in vivo drug … a multi-scale
computational model that serves as a tool to integrate the PK and disease variability, PD drug

A multi-step and multi-scale bioinformatic protocol to investigate potential SARS-CoV-2 vaccine targets

G Russo, V Di Salvatore, G Sgroi… - Briefings in …, 2022 - academic.oup.com
… Here we describe a multi-step and multi-scale bioinformatic … used for vaccine formulations
against tuberculosis (TB) [15]. We … Here, we propose a vaccine discovery in silico trial pipeline

[PDF][PDF] Multi-scale system pharmacology modelling pipeline to assess the prophylactic efficacy of NRTIs against HIV-1

MS Duwal, MV Sunkara, MM von Kleist - J Infect Dis, 2009 - paganz.org
drug resistance), our primary focus was to build a modular multiscale system pharmacology
modelling pipeline … Moreover, the pipeline allows to translate in vitro testable parameters to …

Multiscale modeling in the clinic: drug design and development

CE Clancy, G An, WR Cannon, Y Liu, EE May… - Annals of biomedical …, 2016 - Springer
… to pharmacology, especially in drug development, drug design and drug delivery. Therefore,
… clinical translation of drug development, drug design and drug delivery multiscale models. …

[HTML][HTML] Systems-level modeling of mycobacterial metabolism for the identification of new (multi-) drug targets

RA Rienksma, M Suarez-Diez, L Spina… - Seminars in …, 2014 - Elsevier
anti-TB drugs with known metabolic targets. Table 5 provides an overview of the predicted
phenotypes after drug … the modules of a larger multi-scale modeling framework that connects a …