Molecular markers and candidate genes of plant height traits in upland cotton identified by single‐locus and multi‐locus genome‐wide association study

Z Zhang, X Wang, J Guan, D Zhang, Z Li… - Crop …, 2024 - Wiley Online Library
… allelic variation present in upland cotton and candidate genes significantly associated with
… a Cotton 63K Illumina Infinium SNP array for two plant architecture traits of 719 upland cotton

GWAS analysis and QTL identification of fiber quality traits and yield components in upland cotton using enriched high-density SNP markers

R Liu, J Gong, X Xiao, Z Zhang, J Li, A Liu… - Frontiers in Plant …, 2018 - frontiersin.org
… This study provided important information for MAS and candidate gene functional studies. …
the genetic architecture of fiber quality traits and yield components in upland cotton, we …

Uncovering novel genomic regions and candidate genes for senescence-related traits by genome-wide association studies in upland cotton (Gossypium hirsutum l.)

Q Liu, L Li, Z Feng, S Yu - Frontiers in Plant Science, 2022 - frontiersin.org
… In this study, CDF1 was chosen as the candidate gene affecting cotton senescence, and
has also been observed in a genome-wide association study of salt tolerance in Autotetraploid …

Development of a candidate gene marker for Rf 1 based on a PPR gene in cytoplasmic male sterile CMS-D2 Upland cotton

J Wu, X Cao, L Guo, T Qi, H Wang, H Tang, J Zhang… - Molecular …, 2014 - Springer
… , PPR-like genes located in the Rf 1 region were identified for further cloning and sequence
analysis in Upland cotton. As a result, a new PPR-based candidate gene CAPS marker (…

Genome-wide association analysis reveals genetic variations and candidate genes associated with salt tolerance related traits in Gossypium hirsutum

P Xu, Q Guo, S Meng, X Zhang, Z Xu, W Guo, X Shen - BMC genomics, 2021 - Springer
… the cotton genome has a large LD decay [28, 29], we extracted potential candidate genes
within 100 kb of flanking significant markers on the basis of the published upland cotton

Genome-wide association analysis reveals loci and candidate genes involved in fiber quality traits in sea island cotton (Gossypium barbadense)

X Su, G Zhu, X Song, H Xu, W Li, X Ning, Q Chen… - BMC Plant …, 2020 - Springer
… associated with lint percentage of upland cotton in four different … and gene resources for
developing upland cotton varieties … We found the 785 candidate genes simultaneously identified …

Genetic detection of lint percentage applying single-locus and multi-locus genome-wide association studies in Chinese early-maturity upland cotton

J Su, C Wang, F Hao, Q Ma, J Wang, J Li… - Frontiers in Plant …, 2019 - frontiersin.org
… potential candidate genes might be closely related to cotton … The QTNs and potential
candidate genes for LP, identified in … genetic basis for LP in Chinese early-maturity upland cotton, …

Lint percentage and boll weight QTLs in three excellent upland cotton (Gossypium hirsutum): ZR014121, CCRI60, and EZ60

H Niu, M Kuang, L Huang, H Shang, Y Yuan, Q Ge - BMC Plant Biology, 2023 - Springer
… , QTLs and candidate genes of LP and BW in upland cotton have been widely studied, only
a few of the studied QTLs have been used in the molecular breeding of cotton via marker-…

Identification of novel candidate loci and genes for seed vigor-related traits in upland cotton (Gossypium hirsutum L.) via GWAS

L Li, Y Hu, Y Wang, S Zhao, Y You, R Liu… - Frontiers in Plant …, 2023 - frontiersin.org
… The expression patterns of SV candidate genes in upland cotton were determined by
RNA-seq and quantitative reverse-transcription PCR (qRT-PCR) analysis. RNA isolation method …

Population structure and genetic basis of the agronomic traits of upland cotton in China revealed by a genome‐wide association study using high‐density SNP s

C Huang, X Nie, C Shen, C You, W Li… - Plant Biotechnology …, 2017 - Wiley Online Library
… or crossbreeding of upland cotton germplasm led to gene exchange among different …
in upland cotton of China creates some challenges to identify the exact candidate genes. To …