Drug repurposing for viral cancers: A paradigm of machine learning, deep learning, and virtual screening‐based approaches
… been successfully repurposed various viral cancers. Here in this study, a critical review of
viral cancer related databases, tools, and different machine learning, deep learning and virtual …
viral cancer related databases, tools, and different machine learning, deep learning and virtual …
A deep learning approach reveals unexplored landscape of viral expression in cancer
… deep learning-based method to identify viruses from human RNA sequencing and demonstrate
its ability to rapidly characterize viruses that are expressed in tumors and uncover viral …
its ability to rapidly characterize viruses that are expressed in tumors and uncover viral …
Deep learning detects virus presence in cancer histology
… of virus-driven and non-virus driven cancers are sufficiently different to be detectable by artificial
intelligence (AI) through deep learning-… We show that deep transfer learning can predict …
intelligence (AI) through deep learning-… We show that deep transfer learning can predict …
Liver cancer prediction in a viral hepatitis cohort: A deep learning approach
… However, this cancer is often diagnosed in the later stages, which makes treatment difficult
… This study applied deep learning (DL) models for the early prediction of liver cancer in a …
… This study applied deep learning (DL) models for the early prediction of liver cancer in a …
Development and validation of deep learning classifiers to detect Epstein-Barr virus and microsatellite instability status in gastric cancer: a retrospective multicentre …
… , deep learning-based detection of EBV in gastric cancer has not been investigated to date.
Clinical adoption of deep learning… any molecular biomarker in gastric cancer. To address this …
Clinical adoption of deep learning… any molecular biomarker in gastric cancer. To address this …
Identifying viruses from metagenomic data using deep learning
J Ren, K Song, C Deng, NA Ahlgren… - Quantitative …, 2020 - Wiley Online Library
… To study the association between the viruses and the cancer status, we built a logistic
regression classifier with Lasso penalty to predict the CRC status based on the bin abundance on …
regression classifier with Lasso penalty to predict the CRC status based on the bin abundance on …
DeepVISP: deep learning for virus site integration prediction and motif discovery
… leading to cancer. [ 9 ] In summary, ≈15% of human cancer cases are attributed to oncogenic
viruses. [ 10 ] This calls for novel methods and computational tools for better detecting …
viruses. [ 10 ] This calls for novel methods and computational tools for better detecting …
DeepHPV: a deep learning model to predict human papillomavirus integration sites
… the performance of a deep learning model on independent datasets [33]. Therefore, we used
another viral integration site … She is interested in cancer bioinformatics and deep learning. …
another viral integration site … She is interested in cancer bioinformatics and deep learning. …
DeepEBV: a deep learning model to predict Epstein–Barr virus (EBV) integration sites
J Liang, Z Cui, C Wu, Y Yu, R Tian, H Xie, Z Jin… - …, 2021 - academic.oup.com
… a robust, accurate and explainable deep learning model, providing novel … virus (EBV) is
one of the first described human cancer viruses and is associated with up to 10 types of cancers, …
one of the first described human cancer viruses and is associated with up to 10 types of cancers, …
Characterizing the landscape of viral expression in cancer by deep learning
A Elbasir, Y Ye, DE Schäffer… - 2022 IEEE …, 2022 - ieeexplore.ieee.org
… viral reads and assemble viral contigs. We apply viRNAtrap, which is based on a deep
learning model trained to discriminate viral RNAseq reads, to 14 cancer types from The Cancer …
learning model trained to discriminate viral RNAseq reads, to 14 cancer types from The Cancer …
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