Virome sequencing of stool samples
L Kramná, O Cinek - The Human Virome: Methods and Protocols, 2018 - Springer
… samples. Here, we present a detailed protocol that has been utilized in virome studies where
hundreds of samples … assess the association of the stool virome with susceptibility to type 1 …
hundreds of samples … assess the association of the stool virome with susceptibility to type 1 …
Next-generation sequencing of the DNA virome from fecal samples
… a detailed protocol for DNA virome analysis of low input human stool samples (Monaco et
al.… : 1) stool samples are pulverized to evenly distribute microbial matter; 2) stool is enriched for …
al.… : 1) stool samples are pulverized to evenly distribute microbial matter; 2) stool is enriched for …
Dynamics of the stool virome in very early-onset inflammatory bowel disease
G Liang, MA Conrad, JR Kelsen… - Journal of Crohn's …, 2020 - academic.oup.com
… reads in a typical virome sample are unattributed. Thus, … analysis of the gut virome using
stool samples from a VEO-IBD … contig sequence be covered by the metagenomic virome reads. …
stool samples from a VEO-IBD … contig sequence be covered by the metagenomic virome reads. …
… profiles within the Finnish Diabetes Prediction and Prevention study: Parallel use of 16S profiling and virome sequencing in stool samples from children with islet …
… The sequencing data have been deposited at Sequence Read Archive (NCBI) under project
… 2.5 Bioinformatic analysis of the virome The metagenomic data from the virome sequencing …
… 2.5 Bioinformatic analysis of the virome The metagenomic data from the virome sequencing …
Characterization of stool virome in children newly diagnosed with moderate to severe ulcerative colitis
R Tokarz, JS Hyams, DR Mack, B Boyle… - Inflammatory Bowel …, 2019 - academic.oup.com
… -Vert, a high-throughput sequencing virus capture platform, to examine the stool … stool virome
in IBS, an altered microbiome has been reported in IBS. We only analyzed stool specimens …
in IBS, an altered microbiome has been reported in IBS. We only analyzed stool specimens …
Gut virome sequencing in children with early islet autoimmunity
L Kramná, K Kolářová, S Oikarinen… - Diabetes …, 2015 - Am Diabetes Assoc
… The stool virome in 19 case children, who turned islet autoantibody positive before the age
… control subjects was analyzed using NGS performed from stool samples collected 3, 6, and 9 …
… control subjects was analyzed using NGS performed from stool samples collected 3, 6, and 9 …
A protocol for extraction of infective viromes suitable for metagenomics sequencing from low volume fecal samples
… sample input yielding purified viromes containing phages that are still infective, which also
are of sufficient purity for genome sequencing. … 1–3refer to viromes extracted from feces from …
are of sufficient purity for genome sequencing. … 1–3refer to viromes extracted from feces from …
[HTML][HTML] Emerging view of the human virome
KM Wylie, GM Weinstock, GA Storch - Translational research, 2012 - Elsevier
… in virome analysis, which has been driven by advances in high-throughput, deep sequencing
… in a human stool sample, shotgun sequencing of 532 cloned viral DNA fragments from the …
… in a human stool sample, shotgun sequencing of 532 cloned viral DNA fragments from the …
The human intestinal virome in health and disease
SR Carding, N Davis, L Hoyles - Alimentary pharmacology & …, 2017 - Wiley Online Library
… Deep sequencing of faecal viromes (48 Gb of virome DNA across 12 … viromes obtained from
faecal samples at weeks 1 and 2 of life with probes constructed from the week 1 sequencing …
faecal samples at weeks 1 and 2 of life with probes constructed from the week 1 sequencing …
The human virome: assembly, composition and host interactions
G Liang, FD Bushman - Nature Reviews Microbiology, 2021 - nature.com
… Virome sequencing studies have unveiled some new lineages of human viruses that appear
to … A later study of neonate stool samples, investigating both RNA and DNA viromes, taken a …
to … A later study of neonate stool samples, investigating both RNA and DNA viromes, taken a …
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