Whole-genome microsynteny-based phylogeny of angiosperms

T Zhao, A Zwaenepoel, JY Xue, SM Kao, Z Li… - Nature …, 2021 - nature.com
… likelihood phylogenetic inference, we provide a way to reconstruct phylogenies based on …
analysis of a large-scale whole-genome data set for angiosperms, including more than 120 …

Angiosperm phylogeny: a framework for studies of genome evolution

PS Soltis, DE Soltis - Plant Genome Diversity Volume 2: Physical Structure …, 2012 - Springer
… Here we summarize current methods in phylogeny reconstruction and look … phylogeny,
with an emphasis on angiosperms, based on the past two decades of research. This phylogeny

Impact of wholegenome duplication events on diversification rates in angiosperms

JB Landis, DE Soltis, Z Li, HE Marx… - American journal of …, 2018 - Wiley Online Library
… ), with 102 events spanning more than one tip on the MEDUSA angiosperm phylogeny (Fig.
2). Dividing the angiosperm phylogeny into smaller subsets shows 20 events in the asterids, …

[PDF][PDF] Widespread whole genome duplications contribute to genome complexity and species diversity in angiosperms

R Ren, H Wang, C Guo, N Zhang, L Zeng, Y Chen… - Molecular plant, 2018 - cell.com
angiosperms, we generated transcriptomic datasets for 46 species representing 41 families
lacking genome … The phylogeny and divergent time of 84 families involved in this study was …

Genome-scale data, angiosperm relationships, and 'ending incongruence': a cautionary tale in phylogenetics

DE Soltis, VA Albert, V Savolainen, K Hilu, YL Qiu… - Trends in plant …, 2004 - cell.com
phylogenetic patterns, there is a significant caveat. In spite of, or even because of, the abundant
data per taxon, whole-genome … of all other extant angiosperms, highlighting the limits of …

Genome duplication and the origin of angiosperms

S De Bodt, S Maere, Y Van de Peer - Trends in ecology & evolution, 2005 - cell.com
… and analyses of different sources of data (eg fossil record and phylogenetic analyses using
molecular and morphological characters), the origin of the angiosperms remains unclear. …

Ancient WGD events as drivers of key innovations in angiosperms

PS Soltis, DE Soltis - Current opinion in plant biology, 2016 - Elsevier
… For each example, we describe the WGD, the node of angiosperm phylogeny with which it
is associated, subsequent radiation, and the putative key innovation itself. Our final example, …

Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications

DC Tank, JM Eastman, MW Pennell, PS Soltis… - New …, 2015 - Wiley Online Library
… Here we use phylogenetic and taxonomic data to investigate angiosperm diversification
dynamics. First, we characterize hot and cold spots of diversification across the …

Novel phylogeny of angiosperms inferred from whole-genome microsynteny analysis

T Zhao, J Xue, S Kao, Z Li, A Zwaenepoel, ME Schranz… - BioRxiv, 2020 - biorxiv.org
… approach for phylogenetic tree reconstruction based on genome-wide … phylogenies based
on genome structure and organization are complementary to sequence-based phylogenies

The Chloroplast Genome of Nymphaea alba: Whole-Genome Analyses and the Problem of Identifying the Most Basal Angiosperm

VV Goremykin, KI Hirsch-Ernst, S Wölfl… - … biology and evolution, 2004 - academic.oup.com
phylogenetic analyses of angiosperm chloroplast genome data … appropriate analysis of
complete genome data and the problems … of further complete genome sequences before strong …