[PDF][PDF] Asterid phylogenomics/phylotranscriptomics uncover morphological evolutionary histories and support phylogenetic placement for numerous whole-genome …

C Zhang, T Zhang, F Luebert, Y Xiang… - Molecular biology …, 2020 - academic.oup.com
… successful angiosperm lineages, … phylogeny has not been fully resolved, and the evolutionary
landscape underlying their radiation remains unknown. To resolve the asterid phylogeny, …

[HTML][HTML] Exploring Angiosperms353: Developing and applying a universal toolkit for flowering plant phylogenomics

AJ McDonnell, WJ Baker, S Dodsworth… - Applications in Plant …, 2021 - ncbi.nlm.nih.gov
… To account for frequent (ancient) whole genome duplication … orthologous genes found in
all angiosperms and the 120‐bp … ) and contain useful phylogenetic signal at deep and recent …

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

Angiosperm Phylogeny Group… - Botanical journal of …, 2016 - academic.oup.com
… Both analyses reached similar general conclusions for the angiosperms. Stull et al. (2015) …
been poorly represented in broader phylogenetic studies of the angiosperms. Morton (2011) …

Angiosperm genome comparisons reveal early polyploidy in the monocot lineage

H Tang, JE Bowers, X Wang… - Proceedings of the …, 2010 - National Acad Sciences
Although the timing and extent of a whole-genome duplication occurring in the common
lineage of most modern cereals are clear, the existence or extent of more ancient genome

Reconstructing Dipsacales phylogeny using Angiosperms353: issues and insights

AK Lee, IS Gilman, M Srivastav… - American Journal of …, 2021 - Wiley Online Library
Phylogenetic relationships within major angiosperm clades are increasingly well resolved, …
and involved either whole genome or gene region alignments. First, whole plastid genomes …

Phylotranscriptomics in Cucurbitaceae reveal multiple whole-genome duplications and key morphological and molecular innovations

J Guo, W Xu, Y Hu, J Huang, Y Zhao, L Zhang… - Molecular Plant, 2020 - cell.com
… a phylogenetic framework and new insights into morphological and genomic changes …
Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of …

Molecular evolution and phylogeny of the angiosperm ycf2 gene

JL HUANG, GL SUN, DM ZHANG - Journal of Systematics and …, 2010 - Wiley Online Library
… and phylogenetic utility of the ycf2 gene in angiosperms. We show that the ycf2 gene alone
can provide a consistent and generally well-supported phylogeny … or genome approaches for …

… the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome

M Iorizzo, D Senalik, M Szklarczyk, D Grzebelus… - BMC plant biology, 2012 - Springer
whole genome DNA library can be used for a complete de novo assembly of the mitochondrial
genome of … in terms of similarity was tobacco, confirming their phylogenetic relationship in …

Internal validation of ancestral gene order reconstruction in angiosperm phylogeny

D Sankoff, C Zheng, PK Wall, C DePamphilis… - Comparative Genomics …, 2008 - Springer
… to incorporate descendants of whole genome doubling into phylogenies of species that …
whole genome doubling is the halving algorithm [4]. To overcome the propensity of the genome

Phylotranscriptomic analyses reveal multiple whole-genome duplication events, the history of diversification and adaptations in the Araceae

L Zhao, YY Yang, XJ Qu, H Ma, Y Hu, HT Li… - Annals of …, 2023 - academic.oup.com
whole-genome sequences of 65 species were generated through Illumina sequencing. We
reconstructed the phylogenetic … ) in angiosperms, resulting in additional copies of the entire …