Whole transcriptome sequencing reveals extensive unspliced mRNA in metastatic castration-resistant prostate cancer

AG Sowalsky, Z Xia, L Wang, H Zhao, S Chen… - Molecular Cancer …, 2015 - AACR
RNA from the previously analyzed primary prostate cancer was not available, we were still
interested in whether gene expression data from the RNA-… a correlation analysis between the …

Whole-genome and transcriptome sequencing of prostate cancer identify new genetic alterations driving disease progression

S Ren, GH Wei, D Liu, L Wang, Y Hou, S Zhu, L Peng… - European urology, 2018 - Elsevier
whole-genome and transcriptome sequencing for 65 tumor and … gene-targeted sequencing
for additional 145 tumor-normal … Furthermore, our analysis identified PCDH9 as a novel tumor

Whole exome and transcriptome RNA-sequencing model for the diagnosis of prostate cancer

JB Nikas, NT Mitanis, EG Nikas - ACS omega, 2019 - ACS Publications
… the diagnosis of prostate cancer, which … whole exome and transcriptome RNA-sequencing
(RNA-seq) data that were derived from 468 tumor samples and 51 normal samples of prostatic

Integrated clinical, whole-genome, and transcriptome analysis of multisampled lethal metastatic prostate cancer

GS Bova, HML Kallio, M Annala… - Molecular …, 2016 - molecularcasestudies.cshlp.org
analysis of transcriptome sequence, detailed clinical history, and whole-genome sequencing
of primary tumor … patient (A21), deepening the analysis of this case beyond the WGS data …

Dynamic prostate cancer transcriptome analysis delineates the trajectory to disease progression

M Bolis, D Bossi, A Vallerga, V Ceserani… - Nature …, 2021 - nature.com
… a comprehensive prostate cancer transcriptome atlas that describes the roadmap to …
Prostate Cancer Transcriptome Atlas can infer or validate new therapeutic avenues for cancer

Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression

JR Prensner, MK Iyer, OA Balbin… - Nature …, 2011 - nature.com
… that prostate cancer similarly … applied transcriptome sequencing on a cohort of 102 prostate
tissues and cell lines—20 benign adjacent prostates (benign), 47 localized prostate cancers (…

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach

MN Bainbridge, RL Warren, M Hirst, T Romanuik… - BMC genomics, 2006 - Springer
… parallel sequencing by synthesis for profiling the transcriptome of a human prostate cancer
cell-line… obstacles with using sequencing by synthesis for transcriptome analysis and propose …

Spatial whole transcriptome profiling of primary tumor from patients with metastatic prostate cancer

PV Salachan, M Rasmussen, BP Ulhøi… - … Journal of Cancer, 2023 - Wiley Online Library
… analyzed the expression of previously published single-cell RNA sequencing (scRNAseq)
based marker genes 12 within our dataset. This analysis showed the presence of an LE-KLK3 …

Transcriptome sequencing to detect gene fusions in cancer

CA Maher, C Kumar-Sinha, X Cao… - Nature, 2009 - nature.com
… To assess the feasibility of using massively parallel transcriptome sequencing to identify
novel gene fusions, we generated non-normalized cDNA libraries from the prostate cancer cell …

Whole-transcriptome analysis reveals established and novel associations with TMPRSS2: ERG fusion in prostate cancer

A Chow, Y Amemiya, L Sugar, R Nam… - Anticancer research, 2012 - ar.iiarjournals.org
… In this study, we took advantage of the comprehensive nature of whole-transcriptome
sequencing to examine the expression of established prostate cancer-related genes and to …