Improved genome annotation for Zymomonas mobilis
… annotation in our previous work 6 . We present here an improved version of the ZM4 genome
annotation based on the original primary genome … , a novel gene prediction algorithm …
annotation based on the original primary genome … , a novel gene prediction algorithm …
Genome-scale transcription-translation mapping reveals features of Zymomonas mobilis transcription units and promoters
… Zymomonas mobilis are impeded by a lack of knowledge and tools for predictable and
quantitative programming of gene … ZM4 gene annotations, we assessed the genomic distribution …
quantitative programming of gene … ZM4 gene annotations, we assessed the genomic distribution …
Genome comparison of different Zymomonas mobilis strains provides insights on conservation of the evolution
C Chen, L Wu, Q Cao, H Shao, X Li, Y Zhang… - PLoS …, 2018 - journals.plos.org
… meant percent of gene annotated in each GO term (gene number in … gene number annotated
in each GO term. The left y-axes meant percent of gene annotated in each GO term (gene …
in each GO term. The left y-axes meant percent of gene annotated in each GO term (gene …
Genome‐scale modeling and in silico analysis of ethanologenic bacteria Zymomonas mobilis
H Widiastuti, JY Kim, S Selvarasu… - Biotechnology and …, 2011 - Wiley Online Library
… Among various ethanol-producing microbes, Zymomonas mobilis has acquired special
attention … mobilis ZM4 (Yang et al., 2009a). This new set of gene annotation covers 634 genes (…
attention … mobilis ZM4 (Yang et al., 2009a). This new set of gene annotation covers 634 genes (…
The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4
… complete genome sequence of Zymomonas mobilis ZM4 (ATCC31821), an ethanologenic
microorganism of interest for the production of fuel ethanol. The genome … The genome lacks …
microorganism of interest for the production of fuel ethanol. The genome … The genome lacks …
Complete genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis centrotype ATCC 29191
A Desiniotis, VN Kouvelis, K Davenport, D Bruce… - 2012 - Am Soc Microbiol
… Zymomonas mobilis is an ethanologenic bacterium that has been studied for use in … mobilis
respiration. Here we announce the finishing and annotation of the ATCC 29191 genome, …
respiration. Here we announce the finishing and annotation of the ATCC 29191 genome, …
Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and …
S Yang, JM Vera, J Grass, G Savvakis… - Biotechnology for …, 2018 - Springer
… In addition to the genome sequence revisions described here, we updated all chromosomal
gene annotations based on data compiled from new NCBI-blast and InterProScan searches, …
gene annotations based on data compiled from new NCBI-blast and InterProScan searches, …
Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations
… were not originally described in the primary genome annotation (see Additional file 4, 5). We
have deposited the entire microarray dataset including exponential and stationary phase at …
have deposited the entire microarray dataset including exponential and stationary phase at …
Genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis lectotype strain ATCC 10988
… overall genomic plasticity render this strain important to the study of the species. Here we
report the finishing and annotation of the ATCC 10988 chromosomal and plasmid genome. …
report the finishing and annotation of the ATCC 10988 chromosomal and plasmid genome. …
The genome-scale metabolic network analysis of Zymomonas mobilis ZM4 explains physiological features and suggests ethanol and succinic acid production …
… mobilis. Pinto et al took genome annotation data about Z. mobilis from the NCBI, and
obtained the reaction list with stoichiometry data from KEGG [20], BioCyc [21] and BRENDA [22]. …
obtained the reaction list with stoichiometry data from KEGG [20], BioCyc [21] and BRENDA [22]. …
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