[HTML][HTML] Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

P Krishnan, L Meile, C Plissonneau, X Ma… - BMC biology, 2018 - Springer
Zymoseptoria tritici. We show that differences in melanin levels between two strains of Z. tritici
… and (2) an insertion of transposable elements upstream of the Zmr1 promoter. Remarkably…

[HTML][HTML] Rapid sequence evolution driven by transposable elements at a virulence locus in a fungal wheat pathogen

NK Singh, T Badet, L Abraham, D Croll - BMC genomics, 2021 - Springer
… Here, we performed genome-wide association studies (GWAS) on a highly polymorphic
mapping population of 120 isolates of Zymoseptoria tritici, the most damaging pathogen of …

Species of Zymoseptoria (Dothideomycetes) as a Model System to Study Plant Pathogen Genome Evolution

IC Rojas Barrera, WC Fagundes… - … : Fungal-Plant Interactions, 2022 - Springer
Zymoseptoria tritici. Natural grasslands in the Middle East are a hotspot of diversity for …
tritici supports local adaptation processes via positive selection and transposable element

Expression Profiling of the Wheat Pathogen Zymoseptoria tritici Reveals Genomic Patterns of Transcription and Host-Specific Regulatory Programs

R Kellner, A Bhattacharyya, S Poppe… - Genome biology and …, 2014 - academic.oup.com
… upstream and downstream flanking regions of each transcript, and 3) transposable elements.
Transposable element predictions relied on modified parameters of Goodwin et al. (2011) (…

Recent reactivation of a pathogenicity-associated transposable element triggers major chromosomal rearrangements in a fungal wheat pathogen

T Badet, A Feurtey, D Croll - bioRxiv, 2023 - biorxiv.org
… In this work, we identify the factors driving the invasion of a highly active transposon in the
fungal pathogen Zymoseptoria tritici. The pathogen attacks wheat and causes global losses in …

[HTML][HTML] Genome compartmentalization predates species divergence in the plant pathogen genus Zymoseptoria

A Feurtey, C Lorrain, D Croll, C Eschenbrenner… - BMC genomics, 2020 - Springer
… The wheat pathogen Zymoseptoria tritici with its highly … tritici high-quality chromosome
assemblies revealed the occurrence of “orphan regions” enriched with transposable elements

… Genomics of Four Fungal Grass Pathogens in the Genus Zymoseptoria Identify Novel Orphan Genes and Species-Specific Invasions of Transposable Elements

J Grandaubert, A Bhattacharyya… - G3: Genes, Genomes …, 2015 - academic.oup.com
… few families of transposable elements are shared between Zymoseptoria species while …
Transposable elements (TEs) characteristics along the 21 chromosomes of Zymoseptoria tritici

[HTML][HTML] A highly multiplexed assay to monitor pathogenicity, fungicide resistance and gene flow in the fungal wheat pathogen Zymoseptoria tritici

H Bellah, G Gazeau, S Gélisse, R Amezrou, TC Marcel… - Plos one, 2023 - journals.plos.org
… The genotyping of transposable element insertions in the MFS1 promoter region was not …
a clear assignment of amplicons to transposable element insertion genotypes, but our data …

[HTML][HTML] Recent transposable element bursts are associated with the proximity to genes in a fungal plant pathogen

U Oggenfuss, D Croll - PLoS Pathogens, 2023 - journals.plos.org
… Here, we analyzed a set of 19 telomere-to-telomere genomes of the fungal wheat pathogen
Zymoseptoria tritici. Phylogenetic reconstruction and ancestral state estimates of individual …

Stress-driven transposable element de-repression dynamics and virulence evolution in a fungal pathogen

S Fouché, T Badet, U Oggenfuss… - Molecular biology …, 2020 - academic.oup.com
Transposable elements (TEs) are drivers of genome … of the major wheat pathogen
Zymoseptoria tritici. We experimentally … repeat transposable element and long terminal …