Structure-specific binding of MeCP2 to four-way junction DNA through its methyl CpG-binding domain
TC Galvao, JO Thomas - Nucleic acids research, 2005 - academic.oup.com
… , a Rett syndrome mutation that abolishes binding to methylated DNA, leads to only a slight
… modes of binding to junction and methylated DNA. Binding to unmethylated DNA junctions is …
… modes of binding to junction and methylated DNA. Binding to unmethylated DNA junctions is …
[HTML][HTML] Evaluation of methyl-binding domain based enrichment approaches revisited
… The most comprehensive approach to study genome-wide DNA … We have found that
methyl-binding domain (MBD) enrichment … the DNA and then aim to extract only the methylated …
methyl-binding domain (MBD) enrichment … the DNA and then aim to extract only the methylated …
[HTML][HTML] DNA binding selectivity of MeCP2 due to a requirement for A/T sequences adjacent to methyl-CpG
RJ Klose, SA Sarraf, L Schmiedeberg, SM McDermott… - Molecular cell, 2005 - cell.com
… DNA methylation is interpreted by a family of methyl-CpG binding domain (MBD) proteins
that … Given their common DNA binding domains, different MBD proteins might be expected to …
that … Given their common DNA binding domains, different MBD proteins might be expected to …
The PWWP domain of mammalian DNA methyltransferase Dnmt3b defines a new family of DNA-binding folds
C Qiu, K Sawada, X Zhang, X Cheng - Nature structural biology, 2002 - nature.com
… DNA-binding protein of known structure. Our finding that the PWWP domain alone binds DNA
suggests that PWWP domains … DNMT1 and MBD1 (a methyl-CpG binding protein) but not …
suggests that PWWP domains … DNMT1 and MBD1 (a methyl-CpG binding protein) but not …
Impaired in vivo binding of MeCP2 to chromatin in the absence of its DNA methyl-binding domain
… capable of binding to DNA and chromatin, but that the binding specificity is significantly
impaired, suggesting that interactions with methylated DNA are necessary for binding specificity. …
impaired, suggesting that interactions with methylated DNA are necessary for binding specificity. …
Methyl CpG binding proteins: coupling chromatin architecture to gene regulation
PA Wade - Oncogene, 2001 - nature.com
… Recent structural determinations of the DNA binding domain of two MBD family members,
MeCP2 and MBD1, provide a framework to model the interactions of this family with …
MeCP2 and MBD1, provide a framework to model the interactions of this family with …
Differential sensitivity to methylated DNA by ETS-family transcription factors is intrinsically encoded in their DNA-binding domains
DC Stephens, GMK Poon - Nucleic acids research, 2016 - academic.oup.com
… with DNA sequence (29), and has not been characterized with methylated DNA, we measured
the binding of methylated … as the minimal ETS domain (Ets-1ΔN331) and the PU.1 ETS …
the binding of methylated … as the minimal ETS domain (Ets-1ΔN331) and the PU.1 ETS …
Impact of base analogues within a CpG dinucleotide on the binding of DNA by the methyl-binding domain of MeCP2 and methylation by DNMT1
VV Lao, A Darwanto, LC Sowers - Biochemistry, 2010 - ACS Publications
… DNA binding proteins. In order to probe the mechanism of selective interaction of the
methyl-binding protein with methylated DNA… binding of these oligonucleotides to the …
methyl-binding protein with methylated DNA… binding of these oligonucleotides to the …
Stereospecific nuclear magnetic resonance assignments of the methyl groups of valine and leucine in the DNA-binding domain of the 434 repressor by …
D Neri, T Szyperski, G Otting, H Senn, K Wuethrich - Biochemistry, 1989 - ACS Publications
… diastereotopic methyl groups of the 14 valyl and leucyl residues in the DNA-binding domain
… and 13C assignments of the 28 methyl groups of Val and Leu in the DNA-binding domain 1-…
… and 13C assignments of the 28 methyl groups of Val and Leu in the DNA-binding domain 1-…
Preferential binding of the methyl-CpG binding domain protein 2 at methylated transcriptional start site regions
A Chatagnon, L Perriaud, N Nazaret, S Croze… - Epigenetics, 2011 - Taylor & Francis
… Because MBD2 has a methyl-CpG binding domain, we tested to what extent MBD2
binding to DNA is dependent on methylation. To this end, we performed a methylated DNA …
binding to DNA is dependent on methylation. To this end, we performed a methylated DNA …