… analysis of ChIP-seq data. We address all the major steps in the analysis of ChIP-seq data:
sequencing … , peak calling, differential binding analysis, controlling the false discovery rate, …

… In the case of ChIP-seq, we are facing multiple challenges: (i… comprehensive comparison
of a large number of tools, which have been published to detect differential signals in ChIP-seq …

… Next, we outline various advanced ChIP-seq applications and … single-cell ChIP-seq analysis
methodologies that elucidate … single-cell ChIP-seq (scChIP-seq) analysis that elucidate the …

… comprehensive quality control reports that include comparisons with historical data derived
from over 23,677 public ChIP-seq and DNase-seq … comprehensive ChIP-seq and DNase-seq …

… how ChIP-seq could be integrated with other types of genomic assays, such as gene
expression profiling and genome-wide association studies, to provide a more comprehensive view …

… By an analysis of single, reciprocal and multiple ChIP-seq profiles we prove that MCOT is
a reliable prognostic software that will make the experimental analysis of combinatorial TF …

… To demonstrate the efficiency of seqMINER, we have carried out a comprehensive analysis
of genome-wide chromatin modification data in mouse embryonic stem cells to understand …

… HiChIP is a comprehensive analysis pipeline that can be configured to analyze ChIP-Seq
data derived from varying antibodies and experiment designs. Using public ChIP-Seq data we …

… facilitate the quality control step of ChIP-seq analysis. … view of the quality of a ChIP-seq data
set, it allows experimentalists to … Only CHANCE provides a comprehensive suite of ChIP-seq …

… Using this setup, we provide a comprehensive characterization of 33 DCS tools and
approaches through AUPRCs together with information about their stability, runtime, and memory …