The SMART App: an interactive web application for comprehensive DNA methylation analysis and visualization
Y Li, D Ge, C Lu - Epigenetics & chromatin, 2019 - Springer
… To facilitate DNA methylation analysis, we present the SMART (Shiny Methylation Analysis
… web application for comprehensively analyzing the DNA methylation data of TCGA project. …
… web application for comprehensively analyzing the DNA methylation data of TCGA project. …
Principles and challenges of genome-wide DNA methylation analysis
PW Laird - Nature Reviews Genetics, 2010 - nature.com
… DNA methylation analysis, with a particular emphasis on genome-scale DNA methylation
analysis … This study provided the first comprehensive DNA methylation analysis of a eukaryotic …
analysis … This study provided the first comprehensive DNA methylation analysis of a eukaryotic …
Comprehensive analysis of DNA methylation data with RnBeads
… the analysis and interpretation of large-scale DNA methylation data. RnBeads builds upon
extensive prior research on bioinformatic and statistical methods for DNA methylation analysis…
extensive prior research on bioinformatic and statistical methods for DNA methylation analysis…
Comprehensive DNA methylation analysis reveals a common ten-gene methylation signature in colorectal adenomas and carcinomas
… assess the changes in the DNA methylation profile and also to … DNA methylation field effect
was present, we analyzed the … In addition, we characterized the status of DNA methylation in …
was present, we analyzed the … In addition, we characterized the status of DNA methylation in …
RnBeads 2.0: comprehensive analysis of DNA methylation data
… a broad range of tools for DNA methylation analysis and assembled a detailed feature table
… implements the most comprehensive workflow for analyzing DNA methylation data, while …
… implements the most comprehensive workflow for analyzing DNA methylation data, while …
Comprehensive DNA methylation analysis of hepatitis B virus genome in infected liver tissues
S Jain, TT Chang, S Chen, B Boldbaatar, A Clemens… - Scientific reports, 2015 - nature.com
… obtain comprehensive DNA methylation profiles of the three putative CpG islands in the
HBV DNA in infected livers, with respect to liver disease progression. The extent of methylation …
HBV DNA in infected livers, with respect to liver disease progression. The extent of methylation …
Comprehensive DNA methylation analysis of the Aedes aegypti genome
C Falckenhayn, VC Carneiro… - Scientific reports, 2016 - nature.com
… for DNA methylation analysis and allows the generation of genome-wide methylation maps
at … Importantly, because DNA methylation is detected in its species-specific DNA sequence …
at … Importantly, because DNA methylation is detected in its species-specific DNA sequence …
Comprehensive DNA methylation analysis of benign and malignant adrenocortical tumors
AL Fonseca, J Kugelberg, LF Starker… - Genes …, 2012 - Wiley Online Library
… However, DNA methylation studies thus far have focused on individual genes. The current
study represents the first comprehensive genome-wide analysis of DNA methylation in benign …
study represents the first comprehensive genome-wide analysis of DNA methylation in benign …
Comprehensive DNA methylation analysis of peripheral blood cells derived from patients with first-episode schizophrenia
… methylation profiles of DNA … analyzed the DNA methylation status of 27 578 CpG sites by
means of the Illumina Infinium HumanMethylation27 BeadChip array. Differentially methylated …
means of the Illumina Infinium HumanMethylation27 BeadChip array. Differentially methylated …
methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
DNA methylation is a chemical modification of cytosine bases that is pivotal for gene
regulation,cellular specification and cancer development. Here, we describe an R package, …
regulation,cellular specification and cancer development. Here, we describe an R package, …
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