Predicting methylation status of CpG islands in the human brain

F Fang, S Fan, X Zhang, MQ Zhang - Bioinformatics, 2006 - academic.oup.com
… of methylation status of CpG islands or CGIFs, we calculated a score defined as the proportion
of m 5 CpGs out of all CpGs in … CGIFs with score >0.5 were reported as methylation-prone, …

Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands.

JG Herman, JR Graff, S Myöhänen… - Proceedings of the …, 1996 - National Acad Sciences
… the methylation status of virtually any CpGrich region. In addition to detecting aberrant CpG
island methylation of tumor suppressor genes, MSP will be useful for monitoring CpG islands

CpG island methylation status of miRNAs in esophageal squamous cell carcinoma

X Chen, H Hu, X Guan, G Xiong, Y Wang… - … journal of cancer, 2012 - Wiley Online Library
… -129 is dysregulated in ESCC and methylated in colon cancer, endometrial carcinoma and
… the methylation status of these miRNAs and to determine whether CpG island methylation is …

Evaluation of single CpG sites as proxies of CpG island methylation states at the genome scale

V Barrera, MA Peinado - Nucleic acids research, 2012 - academic.oup.com
Methylation of a CpG island is a faithful marker of silencing of its associated gene. Different
approaches report the methylation status of a CpG island … and CpG island methylation levels (…

CpG island methylation status in gastric carcinoma with and without infection of Epstein-Barr virus

MS Chang, H Uozaki, JM Chong, T Ushiku… - Clinical Cancer …, 2006 - AACR
… Purpose: EBV-associated gastric carcinoma shows global CpG island methylation of … CpG
island methylator phenotype (CIMP) status in gastric carcinoma, we investigated methylation

A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q

Y Yamada, H Watanabe, F Miura, H Soejima… - Genome …, 2004 - genome.cshlp.org
… to examine allelic methylation status, we planned a comprehensive methylation analysis of
… thoroughly in silico and examine their methylation status in a truly comprehensive manner. …

Expression of mRNA for DNA methyltransferases and methyl-CpG–binding proteins and DNA methylation status on CpG islands and pericentromeric satellite regions …

Y Saito, Y Kanai, M Sakamoto, H Saito, H Ishii… - Hepatology, 2001 - Elsevier
… level of DNA methyltransferases may contribute to DNA methylation patterns in HCCs,
we analyzed the DNA methylation status on 7 type C CpG islands in the same cohort. DNA …

[HTML][HTML] CpGIMethPred: computational model for predicting methylation status of CpG islands in human genome

H Zheng, H Wu, J Li, SW Jiang - BMC medical genomics, 2013 - Springer
methylation patterns. Here, we develop CpGIMethPred, the support vector machine-based
models to predict the methylation status of the CpG islands in … effective (CpG island specific …

[HTML][HTML] Prediction of CpG island methylation status by integrating DNA physicochemical properties

P Feng, W Chen, H Lin - Genomics, 2014 - Elsevier
methylation status. In the present study, we proposed a Naïve Bayes model to predict CpG
island methylation status. In … model in predicting the DNA methylation status was 88.22%. This …

CpG islands: algorithms and applications in methylation studies

Z Zhao, L Han - Biochemical and biophysical research communications, 2009 - Elsevier
… Moreover, identification of CGIs is an initial step in many recent studies for predicting
methylation status as well as in the design of methylation detection platforms. We reviewed the …