Rapid quantitation of methylation differences at specific sites using methylation-sensitive single nucleotide primer extension (Ms-SNuPE)

ML Gonzalgo, PA Jones - Nucleic acids research, 1997 - academic.oup.com
… the original CpG sites can be easily determined by incubating the gel-isolated PCR product,
primer(s), and Taq polymerase with either [ 32 P]dCTP or [ 32 P]TTP followed by denaturing

Analysis of the methylation status of imprinted genes based on methylation-specific polymerase chain reaction combined with denaturing high-performance liquid …

A Baumer - Methods, 2002 - Elsevier
… The resulting modified sequences differ markedly from the original genomic sequence, …
alleles differ at a number of positions corresponding to differentially methylated cytosines in …

DNA methylation differences associated with tumor tissues identified by genome scanning analysis

G Liang, CE Salem, CY Mimi, HD Nguyen… - Genomics, 1998 - Elsevier
… Initial denaturation was performed at 94C for 2 min, followed by five cycles under low-stringency
conditions of 94C for 30 s, 40C for 60 s, 72C for 90 s, and then 30 cycles under higher …

[HTML][HTML] Different denaturation rates between methylated and non-methylated genomic DNA can result in allele-specific PCR amplification

B Hilary MS, L Margaret, S Sasi D, K Wee Teik… - Open Journal of …, 2011 - scirp.org
… (2010) DNA methylation of developmental genes in pediatric medulloblastomas identified
by denaturation analysis of methylation differences. Proceedings of the National Academy of …

Denaturing gradient gel electrophoresis to detect methylation changes in DNA

M Shiraishi - Epigenetics Protocols, 2004 - Springer
denaturing regions of the gradient gel and results in focusing of the band. This property can
be applied to detect the difference in melting temperature between methylatedmethylation

DNA methylation analysis by MethyLight technology

BN Trinh, TI Long, PW Laird - Methods, 2001 - Elsevier
… bisulfiteconverted methylation differences inbetween the two primers can be analyzed by any
… DNA is first denatured by as the ratio of polymerase to DNA template is reduced (phase 3). …

DNA methylation analysis: choosing the right method

S Kurdyukov, M Bullock - Biology, 2016 - mdpi.com
… , and relative methylation is calculated based on the difference of their Ct … of the analysis
for heterogeneous samples, methylation-… Currently, it requires the use of denaturing gradient …

In-tube DNA methylation profiling by fluorescence melting curve analysis

J Worm, A Aggerholm, PER GuLDbERG - Clinical chemistry, 2001 - academic.oup.com
… PCR was initiated by incubation for 1 min at 95 C to denature the TaqStart Antibody, … of
uracils to thymine, methylated and unmethylated alleles are predicted to differ in thermal stability …

Qualitative and quantitative polymerase chain reaction-based methods for DNA methylation analyses

IHN Wong - Clinical Applications of PCR, 2006 - Springer
… this method for the quantification of DNA methylation differences at specific CpG sites. In …
or [ 32 P] dTTP followed by denaturing polyacrylamide gel electrophoresis and phosphorimage …

… methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence …

SS Nair, MW Coolen, C Stirzaker, JZ Song… - Epigenetics, 2011 - Taylor & Francis
… the DNA methylation differences of hypomethylated DMRs. … denaturing step prior to
immunoprecipitation. That is, the CpG dense fragments either do not undergo complete denaturation