A reassessment of semiquantitative analytical procedures for DNA methylation: Comparison of bisulfite-and HpaII polymerase-chain-reaction-based methods

A Fuso, S Scarpa, F Grandoni, R Strom… - Analytical biochemistry, 2006 - Elsevier
… In this work we investigate differences between these two techniques in the assessment of
… the methylation percentage of a sequence or site, we recommend that the denaturing step …

[HTML][HTML] How to interpret methylation sensitive amplified polymorphism (MSAP) profiles?

J Fulneček, A Kovařík - BMC genetics, 2014 - Springer
differ in mC distribution. Repetitive sequences usually contain more mC than genic sequences
[9]. Methylation of … that are separated in denaturing polyacrylamide gels. Visualization of …

Denaturing high‐performance liquid chromatography (DHPLC) as a reliable high‐throughput prescreening method for aberrant promoter methylation in cancer

B Betz, AR Florl, HH Seifert, P Dall, WA Schulz… - Human …, 2004 - Wiley Online Library
… technique is based on differences in the affinity of double- … in differences in elution characteristics
of the material analyzed… fragment analyzed at a given partially denaturing temperature, …

Methylation‐sensitive, single‐strand conformation analysis (MS‐SSCA): A rapid method to screen for and analyze methylation

T Bianco, D Hussey, A Dobrovic - Human mutation, 1999 - Wiley Online Library
… The PCR had an initial denaturation at 94C for 9 min, 10 … The PCR had an initial denaturation
at 94C for 9 min, 10 cycles … have multiple nucleotide differences that will favor the adoption …

Analysis of DNA methylation in different maize tissues

Y Lu, T Rong, M Cao - Journal of Genetics and Genomics, 2008 - Elsevier
methylation patterns of the three tissues. Significant differences in cytosine methylation level
… The entire mixture was loaded onto a 4.5% denaturing polyacrylamide gel. Electrophoresis …

DNA-methylation analysis by the bisulfite-assisted genomic sequencing method

P Hajkova, O El-Maarri, S Engemann, J Oswald… - DNA methylation …, 2002 - Springer
… -based methylation-analysis technique described by Frommer et al. (10). As a main difference
… DNA strands after the following denaturation. Agarose-embedded (and -digested) DNA is …

[HTML][HTML] Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data

N Olova, F Krueger, S Andrews, D Oxley, RV Berrens… - Genome biology, 2018 - Springer
… Our results show that Heat denaturation yielded best conversion, whereas Alkaline … number
of methylation differences, showing that our analysis is picking up relevant differences that …

Analysis of DNA methylation by pyrosequencing

C Delaney, SK Garg, R Yung - Immunosenescence: Methods and …, 2015 - Springer
… tray containing denaturation buffer and count to 10 as above. Amplicons are denatured and
… in efficiencies may skew results, potentially masking or overestimating differences between …

Establishment of methylation-sensitive–representational difference analysis and isolation of hypo-and hypermethylated genomic fragments in mouse liver tumors

T Ushijima, K Morimura, Y Hosoya… - Proceedings of the …, 1997 - National Acad Sciences
… N′-[3-propanesulfonic acid], pH 8.0), denatured at 96C for 10 min, and reannealed at 67C
for 16… Denaturing, reannealing, and selective amplification of the self-annealed product were …

Hunting for the 5th base: Techniques for analyzing DNA methylation

O Ammerpohl, JI Martín-Subero, J Richter… - … et Biophysica Acta (BBA …, 2009 - Elsevier
… DNA after the initial denaturation step, several protocols introduced a denaturing step (95 C,
… is the separate analysis and quantification of sequences showing methylation differences in …