[HTML][HTML] Developmental features of DNA methylation during activation of the embryonic zebrafish genome

IS Andersen, AH Reiner, H Aanes, P Aleström, P Collas - Genome biology, 2012 - Springer
zebrafish, we address here whether DNA methylation may pre-pattern early developmental
gene … Our data suggest a pre-patterning of developmental gene repression by a combination …

The Zebrafish Information Network (ZFIN): a resource for genetic, genomic and developmental research

J Sprague, E Doerry, S Douglas… - Nucleic acids …, 2001 - academic.oup.com
genomic and developmental zebrafish data, (ii) provide meaningful ways of relating genes to
mutations to facilitate the understanding of gene … mutant phenotypes and gene expression, …

The zebrafish genome in context: ohnologs gone missing

JH Postlethwait - … Zoology Part B: Molecular and Developmental …, 2007 - Wiley Online Library
… such genome duplication events, and some zebrafish genes … in the zebrafish genome but
absent from the human genome. … and in the origin of developmental innovations. How does the …

[HTML][HTML] Genome-wide survey and developmental expression mapping of zebrafish SET domain-containing genes

XJ Sun, PF Xu, T Zhou, M Hu, CT Fu, Y Zhang, Y Jin… - PloS one, 2008 - journals.plos.org
… are generated by genome-scale duplication instead of random gene duplication. In addition…
all 12 zebrafish gene pairs and the conserved syntenies between zebrafish and human were …

Defining the boundaries of zebrafish developmental genetics

AL Felsenfeld - Nature genetics, 1996 - nature.com
… describes a reference cross panel for mapping zebrafish loci at 0.1 centiMorgans using
simple sequence polymorphisms". This is not the first zebrafish genome mapping tool", nor will it …

[HTML][HTML] The zebrafish reference genome sequence and its relationship to the human genome

K Howe, MD Clark, CF Torroja, J Torrance, C Berthelot… - Nature, 2013 - nature.com
… In addition to enabling the systematic definition of a large range of early developmental
phenotypes, screens in zebrafish have contributed more generally to our understanding of the …

The three-dimensional genome in zebrafish development

A Labudina, JA Horsfield - Briefings in Functional Genomics, 2021 - academic.oup.com
… the developmental consequences of perturbation in 3D genome organisation. Zebrafish
have been used to determine the effects of mutations in proteins responsible for 3D genome

[HTML][HTML] Identification of cis regulatory features in the embryonic zebrafish genome through large-scale profiling of H3K4me1 and H3K4me3 binding sites

AW Aday, LJ Zhu, A Lakshmanan, J Wang… - Developmental …, 2011 - Elsevier
developmental pathways. In this study, we have applied ChIP-Seq on zebrafish embryos to
identify genomic … As in mammalian cells, we find that zebrafish promoters are enriched for …

Understanding and editing the zebrafish genome

GK Varshney, R Sood, SM Burgess - Advances in genetics, 2015 - Elsevier
… of genetic and genomic resources and online tools that zebrafish researchers can use to …
zebrafish have many features that make them an ideal system for genetics and developmental

[HTML][HTML] Developmental constraints on vertebrate genome evolution

J Roux, M Robinson-Rechavi - PLoS Genetics, 2008 - journals.plos.org
… We used gene expression data from two vertebrates: zebrafish, using a microarray
experiment spanning 14 stages of development, and mouse, using EST counts for 26 stages of …