Genome-wide signatures of differential DNA methylation in pediatric acute lymphoblastic leukemia

J Nordlund, CL Bäcklin, P Wahlberg, S Busche… - Genome biology, 2013 - Springer
… provide a comprehensive, genome-wide map of de novo DNA methylation changes in ALL
… by interrogating the methylation levels of 435,941 CpG sites distributed genome-wide in a …

Genome-wide assessment of differential DNA methylation associated with autoantibody production in systemic lupus erythematosus

SA Chung, J Nititham, E Elboudwarej, HL Quach… - PloS one, 2015 - journals.plos.org
… Our results indicate that differential DNA methylation of … whether the differential DNA
methylation observed occurs in all … have shown that differential DNA methylation within interferon-…

Genomewide DNA methylation profiling

M Bibikova, JB Fan - Wiley Interdisciplinary Reviews: Systems …, 2010 - Wiley Online Library
… The analysis showed that evolutionarily conserved regions are the predominant sites where
differential DNA methylation occurs and that a core region surrounding the transcriptional …

Genome-wide screen for differential DNA methylation associated with neural cell differentiation in mouse

R Cortese, J Lewin, L Bäckdahl, M Krispin… - PLoS …, 2011 - journals.plos.org
… By coupling this technology to custom-designed arrays, genome-wide coverage of DNA
methylation … Our results highlight the relevance of differential DNA methylation in neural cell …

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

A Akalin, M Kormaksson, S Li, FE Garrett-Bakelman… - Genome biology, 2012 - Springer
… In addition, normal human tissues harbor unique DNA methylation profiles [7]. Differential
DNA methylation is usually calculated by comparing methylation levelsbetween multiple …

Discovering high-resolution patterns of differential DNA methylation that correlate with gene expression changes

ND VanderKraats, JF Hiken, KF Decker… - Nucleic acids …, 2013 - academic.oup.com
… for discovering differential methylation patterns associated with expression change using
genome-wide high-resolution methylation data: we represent differential methylation as an …

[HTML][HTML] Genome-wide DNA methylation profiling identifies differential methylation in uninvolved psoriatic epidermis

D Verma, AK Ekman, CB Eding, C Enerbäck - Journal of Investigative …, 2018 - Elsevier
genome-wide analysis using epidermal samples to study global DNA methylation and RNA
… −based technique RRBS to investigate DNA methylation in the epidermis derived from …

Genome-wide analysis of differential DNA methylation in Silver-Russell syndrome

D Wu, C Gong, C Su - Science China Life sciences, 2017 - Springer
… In this study, we determine genome-wide DNA methylation profiles in SRS patients and
controls using HM450k. Several DMRs were found at IGF2/H19, which was consistent with …

Genomewide differential DNA methylation in tropically adapted Creole cattle and their Iberian ancestors

N Sevane, R Martínez, MW Bruford - Animal genetics, 2019 - Wiley Online Library
… high stringency parameters to detect significant differentially methylated regions (DMRs).
We generated a genome-wide map of DNA methylation at single-nucleotide resolution in cattle …

[PDF][PDF] Tobacco-smoking-related differential DNA methylation: 27K discovery and replication

LP Breitling, R Yang, B Korn, B Burwinkel… - The American Journal of …, 2011 - cell.com
… for genome-wide DNA methylation screening, was employed.In brief, genomic DNA (500
ng) from each sample was treated by bisulfite conversion with the EZ-96 DNA Methylation Kit (…