[HTML][HTML] DMRforPairs: identifying differentially methylated regions between unique samples using array based methylation profiles
MA Rijlaarsdam, YG van der Zwan, LCJ Dorssers… - BMC …, 2014 - Springer
… However, when analyzing small numbers of samples with unique characteristics (eg normal
and affected tissue of a clinically unique patient or a manipulated cell model), large series of …
and affected tissue of a clinically unique patient or a manipulated cell model), large series of …
[HTML][HTML] De novo identification of differentially methylated regions in the human genome
… the effect size is very small – such as, for example, where no differential probes with P<0.05 …
, gene associations and number of constituent CpGs per region are also reported. The user …
, gene associations and number of constituent CpGs per region are also reported. The user …
Dmrff: Identifying differentially methylated regions efficiently with power and control
… Each targeted region typically includes a small number of … , ie small numbers of samples
relative to the number of … threshold, 0.05 divided by the number of CpG sites tested. This …
relative to the number of … threshold, 0.05 divided by the number of CpG sites tested. This …
An evaluation of supervised methods for identifying differentially methylated regions in Illumina methylation arrays
… number of software tools have been developed for identifying disease-associated differentially
methylated regions (… Differential methylation of a small subset (ie 500) of the clusters were …
methylated regions (… Differential methylation of a small subset (ie 500) of the clusters were …
Methods for identifying differentially methylated regions for sequence-and array-based data
… However, Bump Hunting is not sensitive to finding small DMRs involving a small number
of loci [46]. Similar to ICDMR, one of the previously mentioned methods, WFMM [36] also …
of loci [46]. Similar to ICDMR, one of the previously mentioned methods, WFMM [36] also …
Epigenetics: the DNA methylation profile of tissue-dependent and differentially methylated regions in cells
J Ohgane, S Yagi, K Shiota - Placenta, 2008 - Elsevier
… a small number of aberrant DNA methylation profiles, ie 1–2% of RLGS spots [51]. Thus,
the DNA methylation … is a slightly aberrant DNA methylation status in a small number of T-DMRs. …
the DNA methylation … is a slightly aberrant DNA methylation status in a small number of T-DMRs. …
DMAP: differential methylation analysis package for RRBS and WGBS data
PA Stockwell, A Chatterjee, EJ Rodger… - …, 2014 - academic.oup.com
… to the differentially methylated regions in a format that is easily analyzed with limited … A
DMC approach is perhaps more useful when a small number of CpG sites are analyzed. …
DMC approach is perhaps more useful when a small number of CpG sites are analyzed. …
mCSEA: detecting subtle differentially methylated regions
J Martorell-Marugán, V González-Rumayor… - …, 2019 - academic.oup.com
… 0.2 and it outperformed the rest of methods when the methylation differences were especially
small (0.05). In addition, mCSEA returns a low number of FP, resulting in a high PPV for all …
small (0.05). In addition, mCSEA returns a low number of FP, resulting in a high PPV for all …
[HTML][HTML] DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data
JM Gaspar, RP Hart - BMC bioinformatics, 2017 - Springer
… 2c), thus indicating that this genomic region has a low level of methylation. On the other … )
due to their smaller size (Fig. 4). The overall large quantity of differential methylation found by …
due to their smaller size (Fig. 4). The overall large quantity of differential methylation found by …
Bisulfighter: accurate detection of methylated cytosines and differentially methylated regions
… compared at the same number of false-positive mC calls (Figure 2a). The difference in
true-positive rates was especially remarkable when only a small number of false positives were …
true-positive rates was especially remarkable when only a small number of false positives were …
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