DNA methylation data–based molecular subtype classification related to the prognosis of patients with cervical cancer

C Li, J Ke, J Liu, J Su - Journal of cellular biochemistry, 2020 - Wiley Online Library
… of DNA methylations occurs early and is the most frequent molecular behavior. In this study,
to exploit the specific DNA methylation … from The Cancer Genome Atlas database and further …

EWAS Atlas: a curated knowledgebase of epigenome-wide association studies

M Li, D Zou, Z Li, R Gao, J Sang, Y Zhang… - Nucleic acids …, 2019 - academic.oup.com
… resources, EWAS Atlas features manual curation of EWAS knowledge from extensive
publications. In the current implementation, EWAS Atlas focuses on DNA methylation—one of the …

DNA methylation contributes to natural human variation

H Heyn, S Moran, I Hernando-Herraez… - Genome …, 2013 - genome.cshlp.org
… Taking advantage of genotype and DNA methylation data available from The Cancer Genome
Atlas (TCGA), we determined the associations of pop-CpG sites to the underlying genetic …

DNA Methylation at Specific Loci is Associated with Overall Survival in The Cancer Genome Atlas Patients

R Cavet, G Cavet, J Ronan, P Yue - The FASEB Journal, 2021 - Wiley Online Library
… Ultimately, while global DNA methylation is known to be … DNA methylation at specific loci
also plays a role. Our work suggests that understanding patterns of localized DNA methylation

WHO grading system for invasive pulmonary lung adenocarcinoma reveals distinct molecular signature: an analysis from the cancer genome atlas database

F Forest, D Laville, V Da Cruz, F Casteillo… - Experimental and …, 2022 - Elsevier
methylation of DNA in grade 2 (p = 0.0201 and 0.0359 respectively). MT1G, CLEC12B and
NDUFA7 have a higher methylation of DNA in … analysis and DNA methylation analysis involve …

WAMIDEX: a web atlas of murine genomic imprinting and differential expression

R Schulz, K Woodfine, TR Menheniott, D Bourc'his… - Epigenetics, 2008 - Taylor & Francis
… Genomic imprinting in mammals refers to the establishment of heritable DNA methylation
marks during oogenesis and spermatogenesis at a respectively distinct set of genomic loci, …

[HTML][HTML] Exploring cancer genomic data from the cancer genome atlas project

JS Lee - BMB reports, 2016 - ncbi.nlm.nih.gov
DNA methylation is an epigenetic mark which is frequently associated with transcriptional …
TCGA DNA methylation data were initially generated by using Illumina 27K DNA methylation

The DNA methylation landscape of advanced prostate cancer

SG Zhao, WS Chen, H Li, A Foye, M Zhang… - Nature …, 2020 - nature.com
… We next identified DNA methylation valleys (DMVs), broad regions of hypo-methylation
59,60 that are associated with either the activating histone mark H3K4me3 or the repressive …

[HTML][HTML] Prognostic implications of aberrantly expressed methylation‑driven genes in hepatocellular carcinoma: A study based on The Cancer Genome Atlas

J Li, N Chen, X Gong - Molecular Medicine Reports, 2019 - spandidos-publications.com
… In addition, it has also been found that the mRNA expression of tumor suppressor P14ARF
is regulated by DNA methylation in primary liver cancer; DNA methylation of the P14ARF …

Prediction of genome-wide DNA methylation in repetitive elements

Y Zheng, BT Joyce, L Liu, Z Zhang… - Nucleic acids …, 2017 - academic.oup.com
… The Cancer Genome Atlas data demonstrated … DNA methylation level to be lower in older
Alu/LINE-1 than in younger Alu/LINE-1. We calculated and compared the average methylation