Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm

B Zhang, Y Zhou, N Lin, RF Lowdon, C Hong… - Genome …, 2013 - genome.cshlp.org
… applied M&M to understand how DNA methylation underlies identity at three levels: tissue
types, different … Consistent with our expectations, DNA methylation differences were strongly …

Differential Methylation of Genomic Regions Associated with Heteroblasty Detected by M&M Algorithm in the Nonmodel Species Eucalyptus globulus Labill.

R Hasbún, C Iturra, S Bravo… - … Journal of Genomics, 2016 - Wiley Online Library
… of the local DNA methylation changes between two … considered CpG methylation and
applied the M&M algorithm to … for discovering DNA methylation patterns among different tissue …

DNA methylation-based age prediction using massively parallel sequencing data and multiple machine learning models

A Aliferi, D Ballard, MD Gallidabino, H Thurtle… - Forensic Science …, 2018 - Elsevier
… 3 mM MgCl 2 ), an additional 1 μL of 25 mM MgCl 2 solution for a final concentration of 4 mM,
2 μL (∼5 ng) of bisulphite treated DNA … of different prediction algorithms developed on the …

A comparison of cluster analysis methods using DNA methylation data

KD Siegmund, PW Laird, IA Laird-Offringa - Bioinformatics, 2004 - academic.oup.com
… We compare a variety of approaches for clustering DNA methylation data obtained using the
… We maximize the likelihood using the EM algorithm, estimating the methylation probabilities …

[PDF][PDF] Research Article Differential Methylation of Genomic Regions Associated with Heteroblasty Detected by M&M Algorithm in the Nonmodel Species Eucalyptus …

R Hasbún, C Iturra, S Bravo, B Rebolledo-Jaramillo… - 2016 - academia.edu
… of the local DNA methylation changes between two … considered CpG methylation and
applied the M&M algorithm to … for discovering DNA methylation patterns among different tissue …

[HTML][HTML] DNA methylation analysis: choosing the right method

S Kurdyukov, M Bullock - Biology, 2016 - mdpi.com
… of epigenetics, with a simple algorithm to help guide them in … the assessment of DNA
methylation within particular regulatory … DNA methylation of the pros and cons of the different

[HTML][HTML] Sex differences in DNA methylation assessed by 450 K BeadChip in newborns

P Yousefi, K Huen, V Davé, L Barcellos, B Eskenazi… - BMC genomics, 2015 - Springer
… Additionally, identification of groups of CpGs with 450 K BeadChip methylation differences
between newborn boys and girls was performed using the DMR-finding algorithm DMRcate […

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications

RA Harris, T Wang, C Coarfa, RP Nagarajan… - Nature …, 2010 - nature.com
… Several algorithms are available for bisulfite-treated short-read mapping, … M compared to
700 mM 30 , which could account for the differences. Variation in DNA methylation is a topic of …

The progress on the estimation of DNA methylation level and the detection of abnormal methylation

S Fan, L Wang, L Liang, X Cao, J Tang… - Quantitative …, 2022 - Wiley Online Library
… of DNA methylation changes across different diseases, such … algorithm called PretiMeth was
built based on only one DNA … reads in defined region, M&M constructed a statistical model …

[HTML][HTML] Comparing DNA methylation profiles across different tissues associated with the diagnosis of pediatric asthma

PI Lin, H Shu, TB Mersha - Scientific reports, 2020 - nature.com
DNA methylation (DNAm) profiles in central airway epithelial cells (AECs) may play a key role
in pathological processes in asthma. The goal of the current study is to comparealgorithm