DNA methylation landscapes: provocative insights from epigenomics

MM Suzuki, A Bird - Nature reviews genetics, 2008 - nature.com
… Transposable elements are methylated, as are gene bodies and intergenic DNA. e | The
DNA methylation landscape of plants with large genomes, such as maize, has not been …

[HTML][HTML] DNA methylation and the evolution of developmental complexity in plants

K Bräutigam, Q Cronk - Frontiers in Plant Science, 2018 - frontiersin.org
… All land plants so far examined use DNA methylation to silence … of DNA methylation in
plant evolution and development, drawing widely on studies from across the green plants. …

Repeat elements and the Arabidopsis DNA methylation landscape

FK Teixeira, V Colot - Heredity, 2010 - nature.com
plants and mammals. One of the most striking differences is that plants tend to propagate
pre-existing DNA methylation states … of DNA methylation in the flowering plant Arabidopsis. We …

Loss of DNA methylation affects the recombination landscape in Arabidopsis

M Mirouze, M Lieberman-Lazarovich… - Proceedings of the …, 2012 - National Acad Sciences
… analyzed at two intervals with contrasted DNA methylation levels. The methylcytosine (…
methylation level detected in WT Col-0 plants. Based on the relative DNA methylation in WT plants

Dynamics and Reversibility of the DNA Methylation Landscape of Grapevine Plants (Vitis vinifera) Stressed by In Vitro Cultivation and Thermotherapy

M Baránek, J Čechová, J Raddová, V Holleinová… - PLoS …, 2015 - journals.plos.org
… and reversibility of DNA methylation landscape found in plants stressed by in vitro cultivation.
It was determined that a significant fraction of DNA methylation changes could be induced …

Dynamics and function of DNA methylation in plants

H Zhang, Z Lang, JK Zhu - Nature reviews Molecular cell biology, 2018 - nature.com
… In this Review, we discuss DNA methylation in plants, including … of methylation and
demethylation activities by a so-called methylstat mechanism; the functions of DNA methylation in …

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

X Li, J Zhu, F Hu, S Ge, M Ye, H Xiang, G Zhang… - BMC genomics, 2012 - Springer
DNA methylation plays important biological roles in plants and animals. To examine the rice
genomic methylation landscape … single-base resolution DNA methylome maps for Asian …

DNA methylation underpins the epigenomic landscape regulating genome transcription in Arabidopsis

L Zhao, Q Zhou, L He, L Deng, R Lozano-Duran, G Li… - Genome biology, 2022 - Springer
plants, we determined the impact of complete loss of DNA methylation on the histone
modification landscape and the … of CG and non-CG methylation to this landscape. We found that …

The causes and consequences of DNA methylome variation in plants

DK Seymour, C Becker - Current opinion in plant biology, 2017 - Elsevier
… Epigenetic variation – polymorphisms at the level of DNA methylation or histone … in plants.
Here we review recent literature on DNA methylation variation in both model and crop plant

DNA methylation analysis in plants: review of computational tools and future perspectives

J Omony, T Nussbaumer, R Gutzat - Briefings in bioinformatics, 2020 - academic.oup.com
… In this review, we have discussed the use of bioinformatics tools to study DNA methylation
data in plants. Notably, several studies in humans and mouse were successfully performed …