Altered DNA methylation profile in idiopathic pulmonary fibrosis

YY Sanders, N Ambalavanan, B Halloran… - American journal of …, 2012 - atsjournals.org
Profiling DNA methylation changes may improve our … By overlaying DNA methylation array
data with RNA expression … between the altered DNA methylation profile and corresponding …

DNA methylation: a profile of methods and applications

MF Fraga, M Esteller - Biotechniques, 2002 - Taylor & Francis
… Here we classify the available methods for studying the degree of DNA methy… DNA
methylation, the DNA methylation status of a specific sequence, and how to find new methylation hot …

The methylome: approaches for global DNA methylation profiling

S Beck, VK Rakyan - Trends in Genetics, 2008 - cell.com
… Therefore, although bisulphite conversion-based DNA methylation profiling on arrays is
not well suited for de novo delineation of DNA methylation profiles, it is suited to high-throughput …

Methods in DNA methylation profiling

T Zuo, B Tycko, TM Liu, HJL Lin, THM Huang - Epigenomics, 2009 - Taylor & Francis
… as another approach in DNA methylation profiling. We will discuss this methodology and its
… in studying DNA methylation in a later section. Some of the representative DNA methylation

DNA methylation profiling: an emerging paradigm for cancer diagnosis

A Papanicolau-Sengos, K Aldape - Annual Review of Pathology …, 2022 - annualreviews.org
DNA methylation profiling is an … of DNA methylation patterns as differentiators between
distinct cancer classes. In the rest of this article we refer to DNA methylation as methylation. …

DNA methylation profiling of human chromosomes 6, 20 and 22

F Eckhardt, J Lewin, R Cortese, VK Rakyan, J Attwood… - Nature …, 2006 - nature.com
… After the HEP pilot study 6 , we sought to establish DNA methylation reference profiles for
three human chromosomes from a representative number of healthy human tissues and …

DNA methylation profiling of human hepatocarcinogenesis

G Hernandez‐Meza, J von Felden… - …, 2021 - Wiley Online Library
… (10) In total, this study analyzed DNA methylation profiles of 390 tissue samples (246
previously reported(10) and 144 newly analyzed for this study) from a total of 248 patients (Fig. 1). …

DNA methylation profiles of lung tumors

S Toyooka, KO Toyooka, R Maruyama… - Molecular cancer …, 2001 - AACR
DNA methylation in lung cancers, we compare and contrast the aberrant methylation profiles
… lines are frequently used as models to study DNA methylation, we compared the patterns of …

Microarray-based DNA methylation profiling: technology and applications

A Schumacher, P Kapranov, Z Kaminsky… - Nucleic acids …, 2006 - academic.oup.com
… dynamic state of genome-wide DNA methylation has been hampered by the lack of … DNA
methylation profiles over large genomic regions. A gold standard technique in DNA methylation

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

A Akalin, M Kormaksson, S Li, FE Garrett-Bakelman… - Genome biology, 2012 - Springer
… In addition, normal human tissues harbor unique DNA methylation profiles [7]. Differential
DNA methylation is usually calculated by comparing methylation levelsbetween multiple …