Developmental features of DNA methylation during activation of the embryonic zebrafish genome

IS Andersen, AH Reiner, H Aanes, P Aleström, P Collas - Genome biology, 2012 - Springer
zebrafish, we address here whether DNA methylation may pre-pattern early developmental
gene … Our data suggest a pre-patterning of developmental gene repression by a combination …

[HTML][HTML] Identification of cis regulatory features in the embryonic zebrafish genome through large-scale profiling of H3K4me1 and H3K4me3 binding sites

AW Aday, LJ Zhu, A Lakshmanan, J Wang… - Developmental …, 2011 - Elsevier
developmental pathways. In this study, we have applied ChIP-Seq on zebrafish embryos to
identify genomic … As in mammalian cells, we find that zebrafish promoters are enriched for …

The Zebrafish Information Network (ZFIN): a resource for genetic, genomic and developmental research

J Sprague, E Doerry, S Douglas… - Nucleic acids …, 2001 - academic.oup.com
… The embryo is transparent and contains … , genomic and developmental zebrafish data, (ii)
provide meaningful ways of relating genes to mutations to facilitate the understanding of gene

Stages of embryonic development of the zebrafish

CB Kimmel, WW Ballard, SR Kimmel… - Developmental …, 1995 - Wiley Online Library
… for development of the embryo of the zebrafish, Danio (… changing spectrum of major
developmental processes that occur … are based on morphological features, generally readily identi…

Developmental gene regulatory networks in the zebrafish embryo

TM Chan, W Longabaugh, H Bolouri, HL Chen… - … Acta (BBA)-Gene …, 2009 - Elsevier
zebrafish developmental GRNs share many organizational features with the developmental
… the role of a factor regulating a given target gene changes role over time, eg early activation …

A high-resolution mRNA expression time course of embryonic development in zebrafish

RJ White, JE Collins, IM Sealy, N Wali, CM Dooley… - elife, 2017 - elifesciences.org
… profile of zebrafish development We sampled a total of 18 developmental time points in this
… differentiation and therefore tissue-restricted gene expression in embryos at prim-5. Whole …

Epigenetic marking of the zebrafish developmental program

IS Andersen, LC Lindeman, AH Reiner, O Østrup… - … topics in developmental …, 2013 - Elsevier
… histone modifications occurring during early zebrafish development, as the embryo acquires
transcriptional competence and initiates its own gene expression program. We also address …

The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio

P Haffter, M Granato, M Brand, MC Mullins… - …, 1996 - journals.biologists.com
… phenotype in embryos or early larvae of the zebrafish, Danio … and tissues depends on the
developmental age of the animal… In contrast to the Drosophila genome, the zebrafish genome, …

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

A Pauli, E Valen, MF Lin, M Garber… - Genome …, 2012 - genome.cshlp.org
… to obtain large numbers of developmentally synchronous zebrafish embryos in order to …
Ensembl gene annotations. Compared to the 15,175 zebrafish RefSeq genes, our embryonic

Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm

SF Wu, H Zhang, BR Cairns - Genome research, 2011 - genome.cshlp.org
… One clear and striking featuredevelopmental transcription factors utilized in embryonic
development. First, blocks of H3K27me3 are strikingly enriched at developmental loci, a feature