MethBank: a database integrating next-generation sequencing single-base-resolution DNA methylation programming data

D Zou, S Sun, R Li, J Liu, J Zhang… - Nucleic acids …, 2015 - academic.oup.com
… nucleotide whole-genome DNA methylation data of gametes and early embryos in different
… ; (2) storing vast amounts of methylated CG sites in zebrafish and mouse, with >17 million …

C5‐DNA methyltransferase inhibitors: from screening to effects on zebrafish embryo development

A Ceccaldi, A Rajavelu, C Champion… - …, 2011 - Wiley Online Library
… technical principle to measure DNA methylation inhibition; we … DNA duplex by a
methylation-sensitive restriction endonuclease (RE) that is only active if the substrate is not …

DNA methylation profiling of the fibrinogen gene landscape in human cells and during mouse and zebrafish development

S Vorjohann, JL Pitetti, S Nef, C Gonelle-Gispert… - PLoS …, 2013 - journals.plos.org
… of the fibrinogen genes and fibrinogen expression during zebrafish development in
embryonic liver (8 days post fertilization (dpf)) and adult liver (3 months). Since hepatic …

Role of DNA methylation in altered gene expression patterns in adult zebrafish (Danio rerio) exposed to 3, 3', 4, 4', 5-pentachlorobiphenyl (PCB 126)

N Aluru, SI Karchner, KS Krick, W Zhu… - Environmental …, 2018 - academic.oup.com
… We have previously demonstrated that TCDD exposure alters DNMT gene expression
patterns in developing embryos. Furthermore, we have shown in vitro that XREs in the DNMT …

Profiling DNA methylation patterns of zebrafish liver associated with parental high dietary arachidonic acid

AC Adam, KK Lie, P Whatmore, LM Jakt, M Moren… - PLoS …, 2019 - journals.plos.org
… Both maternal and paternal diets have been shown to influence egg production, viability
and gene expression of the embryos in different model species [23–25]. As DNA methylation

Epigenetic regulation of hematopoiesis by DNA methylation

AV Gore, B Athans, JR Iben, K Johnson, V Russanova… - elife, 2016 - elifesciences.org
… Combined whole-genome analysis of gene expression and DNA methylation in HSPC
isolated from double-transgenic zebrafish embryos by flow cytometry shows that cmyb is one of …

Sex-specific transcription and DNA methylation profiles of reproductive and epigenetic associated genes in the gonads and livers of breeding zebrafish

LV Laing, J Viana, EL Dempster, TMU Webster… - … and Physiology Part A …, 2018 - Elsevier
… to support the critical early stages of embryo development. We hypothesize that, …
embryo development, and are potentially involved in the dynamics of demethylation and re-methylation

Environmental epigenetics in zebrafish

V Cavalieri, G Spinelli - Epigenetics & chromatin, 2017 - Springer
… of DNA methylation patterns of genomic loci not necessarily restricted to AHR targets. … in
Dnmt activity/expression and the DNA methylation level of zebrafish embryos [98]. The authors …

DNA methylation and histone modifications are essential for regulation of stem cell formation and differentiation in zebrafish development

AD Marchione, Z Thompson… - … in functional genomics, 2021 - academic.oup.com
Genomes undergo global methylation changes to stabilize DNA methylation levels in the
embryo to a … A cascade of gene activation and inactivation events results in the establishment of …

Ionising radiation induces promoter DNA hypomethylation and perturbs transcriptional activity of genes involved in morphogenesis during gastrulation in zebrafish

S Murat El Houdigui, C Adam-Guillermin… - International Journal of …, 2020 - mdpi.com
… marks and thereby modulate transcriptional activity, we analysed DNA methylation at the
whole genome scale using WGBS on shield stage embryos. The two highest dose rates of 5 …