Classification of DNA methylation patterns in tumor cell genomes using a CpG island microarray
LR Adrien, NF Schlecht, N Kawachi, RV Smith… - … and Genome Research, 2006 - karger.com
… Our group has initiated experiments to epigenetically profile CpG island hypermethylation
in … for hierarchical clustering of DNA methylation data on a global scale for individual tumor …
in … for hierarchical clustering of DNA methylation data on a global scale for individual tumor …
[HTML][HTML] Postnatal epigenetic regulation of intestinal stem cells requires DNA methylation and is guided by the microbiome
… Remarkably, in CNV mice, an unsupervised hierarchical clustering based purely on DNA
methylation yielded a perfect correspondence with stage of development (Fig. 5a). In GF mice, …
methylation yielded a perfect correspondence with stage of development (Fig. 5a). In GF mice, …
Epigenetic mechanisms and developmental choice hierarchies in T-lymphocyte development
EV Rothenberg - Briefings in functional genomics, 2013 - academic.oup.com
… This is generally considered to be mediated through ‘epigenetic modifications’ of … spacing
and DNA methylation, all aspects of chromatin that have been termed ‘epigenetic’marks. The …
and DNA methylation, all aspects of chromatin that have been termed ‘epigenetic’marks. The …
DNA methylation profiling in Barrett's esophagus and esophageal adenocarcinoma reveals unique methylation signatures and molecular subclasses
AM Kaz, CJ Wong, Y Luo, JB Virgin, MK Washington… - Epigenetics, 2011 - Taylor & Francis
… There were distinct DNA methylation profiles in Barrett's, Barrett's with high-grade dysplasia,
… Unsupervised hierarchical clustering of DNA methylation data at 706 loci in 29 SQ and 29 …
… Unsupervised hierarchical clustering of DNA methylation data at 706 loci in 29 SQ and 29 …
Three DNA methylation epigenotypes in human colorectal cancer
K Yagi, K Akagi, H Hayashi, G Nagae, S Tsuji… - Clinical Cancer …, 2010 - AACR
… is an epigenetic gene inactivation mechanism by DNA … , eg, hierarchical clustering using
quantitative methylation data by a … of DNA methylation, we recently reported methylated DNA …
quantitative methylation data by a … of DNA methylation, we recently reported methylated DNA …
Epigenetic inheritance and genome regulation: is DNA methylation linked to ploidy in haplodiploid insects?
… , were included in hierarchical clustering analysis. Fractional DNA methylation values of a …
not exhibit significant DNA methylation were set to zero prior to hierarchical clustering in order …
not exhibit significant DNA methylation were set to zero prior to hierarchical clustering in order …
Analysing and interpreting DNA methylation data
C Bock - Nature Reviews Genetics, 2012 - nature.com
… DNA methylation is the only epigenetic mark for which a … carry out hierarchical clustering on
all relevant DNA methylation maps … successfully identified epigenetically and phenotypically …
all relevant DNA methylation maps … successfully identified epigenetically and phenotypically …
[HTML][HTML] DNA methylation signatures reveal that distinct combinations of transcription factors specify human immune cell epigenetic identity
… DNA methylation signatures of six immune cell types from human peripheral blood and
determined their relationship to other epigenetic … that it regulates DNA methylation in a context-…
determined their relationship to other epigenetic … that it regulates DNA methylation in a context-…
[HTML][HTML] Human body epigenome maps reveal noncanonical DNA methylation variation
… , with epigenetic mechanisms that could have tissue-specific roles. Surveys of DNA methylation
in … c, d, Hierarchical clustering of DMR methylation levels (c) and expression levels of …
in … c, d, Hierarchical clustering of DMR methylation levels (c) and expression levels of …
Beyond restriction modification: epigenomic roles of DNA methylation in prokaryotes
BP Anton, RJ Roberts - Annual Review of Microbiology, 2021 - annualreviews.org
… roles in our understanding of DNA methylation in all domains of life. It was in the DNA of a
bacterium, … As we now know, DNA methylation is an epigenetic signal capable of altering the …
bacterium, … As we now know, DNA methylation is an epigenetic signal capable of altering the …