ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq and Bisulfite-seq data
… with ChIP-seq data can be visualized with the Peak Browser tool and a genome browser to
explore the epigenomic landscape … This epigenomic landscape can also be characterized for …
explore the epigenomic landscape … This epigenomic landscape can also be characterized for …
Profiling chromatin regulatory landscape: insights into the development of ChIP-seq and ATAC-seq
S Ma, Y Zhang - Molecular biomedicine, 2020 - Springer
… Epigenome sequencing technologies have evolved from low-throughput … epigenome biology,
we discuss the development of epigenome sequencing technologies, especially ChIP-seq …
we discuss the development of epigenome sequencing technologies, especially ChIP-seq …
[HTML][HTML] Methods for ChIP-seq analysis: A practical workflow and advanced applications
R Nakato, T Sakata - Methods, 2021 - Elsevier
… epigenomic landscape contributes to cell identity, development, lineage specification, and
disease. In this review, we first present a typical ChIP-seq … advanced ChIP-seq applications …
disease. In this review, we first present a typical ChIP-seq … advanced ChIP-seq applications …
Epigenetic landscape of drug responses revealed through large-scale ChIP-seq data analyses
… epigenetic landscape of drug responses, in terms of transcription factors (TFs), through
large-scale ChIP-seq … and almost all publicly available ChIP-seq data (consisting of 13,558 …
large-scale ChIP-seq … and almost all publicly available ChIP-seq data (consisting of 13,558 …
Distinct epigenetic landscapes underlie the pathobiology of pancreatic cancer subtypes
… ), and DNA methylation to define epigenomic landscapes for … that the distinct epigenomic
landscapes are regulated by … new insight into the epigenetic landscapes associated with the …
landscapes are regulated by … new insight into the epigenetic landscapes associated with the …
[HTML][HTML] Comprehensive characterization of the epigenetic landscape in multiple myeloma
E Alaterre, S Ovejero, L Herviou, H de Boussac… - Theranostics, 2022 - ncbi.nlm.nih.gov
… A comprehensive characterization of the epigenetic landscape of HMCLs would … epigenetic
landscape of HMCLs. We generated chromatin immunoprecipitation sequencing (ChIP-seq) …
landscape of HMCLs. We generated chromatin immunoprecipitation sequencing (ChIP-seq) …
Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape
A Griffon, Q Barbier, J Dalino, J van Helden… - Nucleic acids …, 2015 - academic.oup.com
… The large collections of ChIP-seq data rapidly accumulating … fully apprehended by integrating
public ChIP-seq data sets and … and retained 395 available ChIP-seq data sets merged with …
public ChIP-seq data sets and … and retained 395 available ChIP-seq data sets merged with …
Epigenetic landscape during coronavirus infection
A Schäfer, RS Baric - Pathogens, 2017 - mdpi.com
… regulate the host epigenome, especially focusing on highly pathogenic respiratory RNA virus
infections as a model. By combining measures of epigenome reorganization with RNA and …
infections as a model. By combining measures of epigenome reorganization with RNA and …
Epigenetic landscape reveals MECOM as an endothelial lineage regulator
… To systematically investigate the epigenetic landscapes of ECs, we … ChIP-Seq data of 11
distinct histone modifications, DNase-Seq data that indicate chromatin openness, and ChIP-Seq …
distinct histone modifications, DNase-Seq data that indicate chromatin openness, and ChIP-Seq …
Identifying dispersed epigenomic domains from ChIP-Seq data
… like ChIP-Seq have led to a flood of high-quality data about these epigenomic domains, …
Results: We present the RSEG method for identifying epigenomic domains from ChIP-Seq data …
Results: We present the RSEG method for identifying epigenomic domains from ChIP-Seq data …
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