[HTML][HTML] High density DNA methylation array with single CpG site resolution

M Bibikova, B Barnes, C Tsan, V Ho, B Klotzle, JM Le… - Genomics, 2011 - Elsevier
… of RefSeq genes with multiple probes per gene, 96% of CpG … of CpG methylation using
bisulfite-converted genomic DNA. … to analyze DNA methylation in normal and tumor DNA samples …

Repression of genes by DNA methylation depends on CpG density and promoter strength: evidence for involvement of a methyl‐CpG binding protein.

J Boyes, A Bird - The EMBO journal, 1992 - embopress.org
CpG density of the genes used in this study. The transcribed … of the three genes are pictured
below the title of each gene; the … gene show the CpG dinucleotides which can be methylated

Genome-wide CpG density and DNA methylation analysis method (MeDIP, RRBS, and WGBS) comparisons

D Beck, M Ben Maamar, MK Skinner - Epigenetics, 2022 - Taylor & Francis
CpG density in a variety of different species genomes and correlate this to various DNA
methylationgene promoters and high CpG density has led to the misleading concept that the low-…

[HTML][HTML] DNA Methylation variability among individuals is related to CpGs cluster density and evolutionary signatures

D Palumbo, O Affinito, A Monticelli, S Cocozza - BMC genomics, 2018 - Springer
… We analyzed methylation variability values in relation to CpG cluster density and we found
a … Furthermore, we found that genes related to CpGs with high methylation variability values …

DNA methylation and gene expression

Z Siegfried, I Simon - Wiley Interdisciplinary Reviews: Systems …, 2010 - Wiley Online Library
… regions maintain their CpG density whereas methylated regions lose their CpG … between
methylation and CpG density; higher CpG density is associated with lower methylation

Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation

MD Robinson, C Stirzaker, AL Statham… - Genome …, 2010 - genome.cshlp.org
DNA methylation is an essential epigenetic modification that plays a key role associated
with the regulation of gene expression during differentiation, but in disease states such as …

[HTML][HTML] Local CpG density affects the trajectory and variance of age-associated DNA methylation changes

J Higham, L Kerr, Q Zhang, RM Walker, SE Harris… - Genome Biology, 2022 - Springer
… Some studies have provided evidence that genetic variants affect how DNA methylation
changes with age at individual loci [28, 29]. However, a study of mice possessing a copy of …

… of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG …

SS Nair, MW Coolen, C Stirzaker, JZ Song… - Epigenetics, 2011 - Taylor & Francis
… Alterations in DNA methylation can lead to aberrant gene expression and can play a critical
… the corresponding CpG densities and DNA methylation density of the detected regions. The …

Landscape of DNA methylation on the X chromosome reflects CpG density, functional chromatin state and X-chromosome inactivation

AM Cotton, EM Price, MJ Jones… - … molecular genetics, 2015 - academic.oup.com
… through the silencing of the majority of genes on one of the female X chromosomes. … DNA
methylation (DNAm) with CpG density, transcriptional activity and chromatin state at genes

Whole genome DNA methylation analysis based on high throughput sequencing technology

N Li, M Ye, Y Li, Z Yan, LM Butcher, J Sun, X Han… - Methods, 2010 - Elsevier
… YH is an Asian male whose whole genome has been resequenced previously using genetic
… to elute in as it strikes a good balance between CpG density and DNA methylation level. …