Evolutionary patterns of genic DNA methylation vary across land plants

S Takuno, JH Ran, BS Gaut - Nature plants, 2016 - nature.com
genic DNA methylation across the plant kingdom or about the evolutionary processes that
shape them. To characterize gene-body methylation … , C or T) methylation in expressed genes. …

Control of Genic DNA Methylation by a jmjC Domain-Containing Protein in Arabidopsis thaliana

H Saze, A Shiraishi, A Miura, T Kakutani - science, 2008 - science.org
… Through genetic screen of mutants showing ectopic cytosine methylation in a genic region,
… bonsai methylation 1), in Arabidopsis thaliana. In addition to the ectopic cytosine methylation, …

DNA methylation in insects: on the brink of the epigenomic era

KM Glastad, BG Hunt, SV Yi… - Insect molecular …, 2011 - Wiley Online Library
… In contrast, the genomes of several insects with genic DNA methylation exhibit less striking
signatures of CpG depletion, including (D) the jewel wasp Nasonia vitripennis, (E) the fire ant …

Cross-Species Analysis of Genic GC3 Content and DNA Methylation Patterns

T Tatarinova, E Elhaik… - Genome Biology and …, 2013 - academic.oup.com
… of CpG dinucleotides are methylated. Interestingly, in some model organisms, such as yeast
and fruit fly, there is little or no DNA methylation. Also, DNA methylation in mammals differs …

DNA methylation analysis determines the high frequency of genic hypomethylation and low frequency of hypermethylation events in plasma cell tumors

B Salhia, A Baker, G Ahmann, D Auclair, R Fonseca… - Cancer research, 2010 - AACR
… Thus, the goal of this study is to perform a DNA methylationDNA methylation events
associated with each tumor stage and tumor progression. This is the first study to show that genic

DNA methylation de novo

A Bird - Science, 1999 - science.org
… de novo DNA methylation (that is, addition of methyl groups to DNA that has not been methylated
… (plus their inert relics), and other “non-genicDNA all being affected. The distribution of …

Natural variation in DNA methylation homeostasis and the emergence of epialleles

Y Zhang, JM Wendte, L Ji… - Proceedings of the …, 2020 - National Acad Sciences
genic DNA methylation are highly variable among 725 A. thaliana accessions. We found that
genic DNA methylation … in heterochromatin, suggesting that certain methylation pathway(s) …

Function and information content of DNA methylation

D Schübeler - Nature, 2015 - nature.com
genic DNA methylation comes at the price of an increased mutational load. Among vertebrates,
CG depletion is particularly prominent in mammalian genomes, but less obvious in those …

Roles of distal and genic methylation in the development of prostate tumorigenesis revealed by genome-wide DNA methylation analysis

Y Wang, RR Jadhav, J Liu, D Wilson, Y Chen… - Scientific reports, 2016 - nature.com
methylation patterns (CDMPs). We found several groups of genes that show opposite methylation
patterns in Distal and Genic … suggest that DNA methylation in Distal and Genic regions …

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription

D Zilberman, M Gehring, RK Tran, T Ballinger… - Nature …, 2007 - nature.com
genic transcription and DNA methylation … of genic DNA methylation remains essentially
unknown. In order to investigate the role of genic methylation, we have mapped DNA methylation