Genome‐wide DNA methylation profiling

M Bibikova, JB Fan - Wiley Interdisciplinary Reviews: Systems …, 2010 - Wiley Online Library
… Either whole- or reduced-genome approaches have been used to get the most comprehensive
DNA methylation profiles in organisms of various genome sizes. Copyright © 2009 John …

Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling

P Boyle, K Clement, H Gu, ZD Smith, M Ziller, JL Fostel… - Genome biology, 2012 - Springer
large-scale sequencing projects; however, generating libraries has become the bottleneck in
DNA methylation profiling … its use for large-scale DNA methylation profiling, we modified the …

Methods in DNA methylation profiling

T Zuo, B Tycko, TM Liu, HJL Lin, THM Huang - Epigenomics, 2009 - Taylor & Francis
… of DNA methylation provide an important level of genomic regulation. In this article, we review
methods for analyzing these genome-wide … using genome-wide DNA methylation profiling. …

Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping

C Bock, J Walter, M Paulsen… - Nucleic acids research, 2008 - academic.oup.com
DNA methylation variation among healthy individuals. We performed bioinformatic analysis
of high-resolution methylation profiles … variation between DNA methylation profiles are used …

Profiling genome-wide DNA methylation

WS Yong, FM Hsu, PY Chen - Epigenetics & chromatin, 2016 - Springer
methylation assays, along with comparisons and biological examples, to provide an overview
of DNA methylation profiling … technologies make genome-wide profiling possible at a single…

Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling

H Gu, ZD Smith, C Bock, P Boyle, A Gnirke… - Nature protocols, 2011 - nature.com
… to genome-wide scale using arrays and next… DNA methylation measurements. This protocol
should enable any standard molecular biology laboratory to generate RRBS libraries of high

The methylome: approaches for global DNA methylation profiling

S Beck, VK Rakyan - Trends in Genetics, 2008 - cell.com
… This results in a reduction of sequence complexity, and consequently, it becomes difficult
to design enough unique probes to extend this approach to a genome-wide scale. However, …

Genome-scale DNA methylation analysis

SD Fouse, RP Nagarajan, JF Costello - Epigenomics, 2010 - Taylor & Francis
… The majority of restriction enzymes used for methylation profiling are precise and … The
bisulfite approach, however, has been difficult to apply on a genome-wide scale for mammals for …

Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution

H Gu, C Bock, TS Mikkelsen, N Jäger, ZD Smith… - Nature …, 2010 - nature.com
… for its ability to quantify the DNA methylation status of essentially all … -scale DNA methylation
analysis 3,4 . Here we show that RRBS is highly appropriate for DNA methylation profiling of …

Genome-scale DNA methylation maps of pluripotent and differentiated cells

A Meissner, TS Mikkelsen, H Gu, M Wernig, J Hanna… - Nature, 2008 - nature.com
… genome-scale DNA methylation profiles at nucleotide resolution in mammalian cells. Using
high-… It has been impractical to apply bisulphite sequencing at a genome-wide scale because …