[HTML][HTML] A cross-package Bioconductor workflow for analysing methylation array data
Methylation in the human genome is known to be associated with development and disease.
The Illumina Infinium methylation arrays are by far the most common way to interrogate …
The Illumina Infinium methylation arrays are by far the most common way to interrogate …
Genome‐wide DNA methylation profiling
M Bibikova, JB Fan - Wiley Interdisciplinary Reviews: Systems …, 2010 - Wiley Online Library
DNA methylation plays a critical role in the regulation of gene expression. The ability to
access the methylation status for a large number of genes or the entire genome should …
access the methylation status for a large number of genes or the entire genome should …
ChAMP: 450k chip analysis methylation pipeline
TJ Morris, LM Butcher, A Feber, AE Teschendorff… - …, 2014 - academic.oup.com
Abstract The Illumina Infinium HumanMethylation450 BeadChip is a new platform for high-
throughput DNA methylation analysis. Several methods for normalization and processing of …
throughput DNA methylation analysis. Several methods for normalization and processing of …
Association of DNA methylation with age, gender, and smoking in an Arab population
SB Zaghlool, M Al-Shafai, WA Al Muftah, P Kumar… - Clinical …, 2015 - Springer
Background Modification of DNA by methylation of cytosines at CpG dinucleotides is a
widespread phenomenon that leads to changes in gene expression, thereby influencing and …
widespread phenomenon that leads to changes in gene expression, thereby influencing and …
Comprehensive high-throughput arrays for relative methylation (CHARM)
This study was originally conceived to test in a rigorous way the specificity of three major
approaches to high-throughput array-based DNA methylation analysis:(1) MeDIP, or …
approaches to high-throughput array-based DNA methylation analysis:(1) MeDIP, or …
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
Abstract Motivation: The recently released Infinium HumanMethylation450 array (the
'450k'array) provides a high-throughput assay to quantify DNA methylation (DNAm) at∼ 450 …
'450k'array) provides a high-throughput assay to quantify DNA methylation (DNAm) at∼ 450 …
High-throughput methylation profiling by MCA coupled to CpG island microarray
MRH Estécio, PS Yan, AEK Ibrahim, CS Tellez… - Genome …, 2007 - genome.cshlp.org
An abnormal pattern of DNA methylation occurs at specific genes in almost all neoplasms.
The lack of high-throughput methods with high specificity and sensitivity to detect changes in …
The lack of high-throughput methods with high specificity and sensitivity to detect changes in …
Gene set enrichment analysis for genome-wide DNA methylation data
DNA methylation is one of the most commonly studied epigenetic marks, due to its role in
disease and development. Illumina methylation arrays have been extensively used to …
disease and development. Illumina methylation arrays have been extensively used to …
Quantitative comparison of DNA methylation assays for biomarker development and clinical applications
Nature biotechnology, 2016 - nature.com
DNA methylation patterns are altered in numerous diseases and often correlate with
clinically relevant information such as disease subtypes, prognosis and drug response. With …
clinically relevant information such as disease subtypes, prognosis and drug response. With …
Exploring genome-wide DNA methylation profiles altered in hepatocellular carcinoma using Infinium HumanMethylation 450 BeadChips
J Shen, S Wang, YJ Zhang, HC Wu, MG Kibriya… - Epigenetics, 2013 - Taylor & Francis
Hepatocellular carcinoma (HCC) incidence has increased in the US and also has one of the
fastest growing death rates of any cancer. The purpose of the current study was to discover …
fastest growing death rates of any cancer. The purpose of the current study was to discover …