Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis
Abstract The Cistrome Data Browser (DB) is a resource of human and mouse cis-regulatory
information derived from ChIP-seq, DNase-seq and ATAC-seq chromatin profiling assays …
information derived from ChIP-seq, DNase-seq and ATAC-seq chromatin profiling assays …
[HTML][HTML] Cistrome Data Browser: integrated search, analysis and visualization of chromatin data
Abstract The Cistrome Data Browser is a resource of ChIP-seq, ATAC-seq and DNase-seq
data from humans and mice. It provides maps of the genome-wide locations of transcription …
data from humans and mice. It provides maps of the genome-wide locations of transcription …
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse
Chromatin immunoprecipitation, DNase I hypersensitivity and transposase-accessibility
assays combined with high-throughput sequencing enable the genome-wide study of …
assays combined with high-throughput sequencing enable the genome-wide study of …
ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments
J Chèneby, M Gheorghe, M Artufel… - Nucleic acids …, 2018 - academic.oup.com
With this latest release of ReMap (http://remap. cisreg. eu), we present a unique collection of
regulatory regions in human, as a result of a large-scale integrative analysis of ChIP-seq …
regulatory regions in human, as a result of a large-scale integrative analysis of ChIP-seq …
Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape
A Griffon, Q Barbier, J Dalino, J van Helden… - Nucleic acids …, 2015 - academic.oup.com
The large collections of ChIP-seq data rapidly accumulating in public data warehouses
provide genome-wide binding site maps for hundreds of transcription factors (TFs) …
provide genome-wide binding site maps for hundreds of transcription factors (TFs) …
ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq and Bisulfite-seq data
Abstract ChIP-Atlas (https://chip-atlas. org) is a web service providing both GUI-and API-
based data-mining tools to reveal the architecture of the transcription regulatory landscape …
based data-mining tools to reveal the architecture of the transcription regulatory landscape …
[HTML][HTML] Cistrome: an integrative platform for transcriptional regulation studies
The increasing volume of ChIP-chip and ChIP-seq data being generated creates a
challenge for standard, integrative and reproducible bioinformatics data analysis platforms …
challenge for standard, integrative and reproducible bioinformatics data analysis platforms …
Integrating ChIP-seq with other functional genomics data
S Jiang, A Mortazavi - Briefings in functional genomics, 2018 - academic.oup.com
Transcription is regulated by transcription factor (TF) binding at promoters and distal
regulatory elements and histone modifications that control the accessibility of these …
regulatory elements and histone modifications that control the accessibility of these …
[HTML][HTML] Practical guidelines for the comprehensive analysis of ChIP-seq data
Mapping the chromosomal locations of transcription factors, nucleosomes, histone
modifications, chromatin remodeling enzymes, chaperones, and polymerases is one of the …
modifications, chromatin remodeling enzymes, chaperones, and polymerases is one of the …
Ch IP‐Atlas: a data‐mining suite powered by full integration of public Ch IP‐seq data
We have fully integrated public chromatin chromatin immunoprecipitation sequencing (Ch IP‐
seq) and DN ase‐seq data (n> 70,000) derived from six representative model organisms …
seq) and DN ase‐seq data (n> 70,000) derived from six representative model organisms …