Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tumor tissue-of-origin mapping from plasma DNA
Adjacent CpG sites in mammalian genomes can be co-methylated owing to the processivity
of methyltransferases or demethylases, yet discordant methylation patterns have also been …
of methyltransferases or demethylases, yet discordant methylation patterns have also been …
Aberrant methylation of genes in low-grade astrocytomas
JF Costello, C Plass, WK Cavenee - Brain tumor pathology, 2000 - Springer
The underlying basis of the malignant progression of astrocytomas is a specific and
cumulative series of genetic alterations, most of which are confined to high-grade tumors. In …
cumulative series of genetic alterations, most of which are confined to high-grade tumors. In …
Methylation profiling of CpG islands in human breast cancer cells
THM Huang, MR Perry, DE Laux - Human molecular genetics, 1999 - academic.oup.com
CpG island hypermethylation is known to be associated with gene silencing in cancer. This
epigenetic event is generally accepted as a stochastic process in tumor cells resulting from …
epigenetic event is generally accepted as a stochastic process in tumor cells resulting from …
[HTML][HTML] CpG island methylation in a mouse model of lymphoma is driven by the genetic configuration of tumor cells
R Opavsky, SH Wang, P Trikha, A Raval, Y Huang… - PLoS …, 2007 - journals.plos.org
Hypermethylation of CpG islands is a common epigenetic alteration associated with cancer.
Global patterns of hypermethylation are tumor-type specific and nonrandom. The biological …
Global patterns of hypermethylation are tumor-type specific and nonrandom. The biological …
Transcriptional alterations in glioma result primarily from DNA methylation–independent mechanisms
E Le Boiteux, A Fogli, M Müller-Barthélémy… - Genome …, 2019 - genome.cshlp.org
In cancer cells, aberrant DNA methylation is commonly associated with transcriptional
alterations, including silencing of tumor suppressor genes. However, multiple epigenetic …
alterations, including silencing of tumor suppressor genes. However, multiple epigenetic …
Genome‐Wide Analysis of Epigenetics in Cancer
MP Lee - Annals of the New York Academy of Sciences, 2003 - Wiley Online Library
Human cancers are caused by multiple mechanisms. Research in the last 30 years has
firmly established the roles of a group of genes including oncogenes, tumor suppressor …
firmly established the roles of a group of genes including oncogenes, tumor suppressor …
Recurrent epimutations activate gene body promoters in primary glioblastoma
RP Nagarajan, B Zhang, RJA Bell, BE Johnson… - Genome …, 2014 - genome.cshlp.org
Aberrant DNA hypomethylation may play an important role in the growth rate of glioblastoma
(GBM), but the functional impact on transcription remains poorly understood. We assayed …
(GBM), but the functional impact on transcription remains poorly understood. We assayed …
The human colon cancer methylome shows similar hypo-and hypermethylation at conserved tissue-specific CpG island shores
For the past 25 years, it has been known that alterations in DNA methylation (DNAm) occur
in cancer, including hypomethylation of oncogenes and hypermethylation of tumor …
in cancer, including hypomethylation of oncogenes and hypermethylation of tumor …
Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina–associated domains
Extensive changes in DNA methylation are common in cancer and may contribute to
oncogenesis through transcriptional silencing of tumor-suppressor genes. Genome-scale …
oncogenesis through transcriptional silencing of tumor-suppressor genes. Genome-scale …
Epigenetic remodeling in colorectal cancer results in coordinate gene suppression across an entire chromosome band
J Frigola, J Song, C Stirzaker, RA Hinshelwood… - Nature …, 2006 - nature.com
We report a new mechanism in carcinogenesis involving coordinate long-range epigenetic
gene silencing. Epigenetic silencing in cancer has always been envisaged as a local event …
gene silencing. Epigenetic silencing in cancer has always been envisaged as a local event …