DNA methylation loss in late-replicating domains is linked to mitotic cell division

W Zhou, HQ Dinh, Z Ramjan, DJ Weisenberger… - Nature …, 2018 - nature.com
DNA methylation loss occurs frequently in cancer genomes, primarily within lamina-
associated, late-replicating regions termed partially methylated domains (PMDs). We …

Detection and interpretation of altered methylation patterns in cancer cells

T Ushijima - Nature Reviews Cancer, 2005 - nature.com
Epigenetic alterations, such as abnormal DNA-methylation patterns, are associated with
many human tumour types. New techniques have been developed to perform genome-wide …

Identification of driver and passenger DNA methylation in cancer by epigenomic analysis

S Kalari, GP Pfeifer - Advances in genetics, 2010 - Elsevier
Human cancer genomes are characterized by widespread aberrations in DNA methylation
patterns including DNA hypomethylation of mostly repetitive sequences and …

The DNA methylation landscape of glioblastoma disease progression shows extensive heterogeneity in time and space

J Klughammer, B Kiesel, T Roetzer, N Fortelny… - Nature medicine, 2018 - nature.com
Glioblastoma is characterized by widespread genetic and transcriptional heterogeneity, yet
little is known about the role of the epigenome in glioblastoma disease progression. Here …

Dissecting complex epigenetic alterations in breast cancer using CpG island microarrays

PS Yan, CM Chen, H Shi, F Rahmatpanah, SH Wei… - Cancer Research, 2001 - AACR
It is now clear that aberrant DNA methylation observed in cancer cells is not restricted to a
few CpG islands, but affects multiple loci. When this epigenetic event occurs at the 5′-end …

Epigenomic analysis of Alu repeats in human ependymomas

H Xie, M Wang, MF Bonaldo… - Proceedings of the …, 2010 - National Acad Sciences
Global loss of DNA methylation has been known for decades as an epigenomic aberration
associated with carcinogenesis and cancer progression. Loss of DNA methylation affects …

IDH1 mutation is sufficient to establish the glioma hypermethylator phenotype

S Turcan, D Rohle, A Goenka, LA Walsh, F Fang… - Nature, 2012 - nature.com
Both genome-wide genetic and epigenetic alterations are fundamentally important for the
development of cancers, but the interdependence of these aberrations is poorly understood …

Distal CpG islands can serve as alternative promoters to transcribe genes with silenced proximal promoters

S Sarda, A Das, C Vinson, S Hannenhalli - Genome research, 2017 - genome.cshlp.org
DNA methylation at the promoter of a gene is presumed to render it silent, yet a sizable
fraction of genes with methylated proximal promoters exhibit elevated expression. Here, we …

A bird's eye view of global methylation

C Eng, JG Herman, SB Baylin - Nature genetics, 2000 - nature.com
Restriction landmark genomic scanning applied to a broad variety of cancer types can
disclose tumour-specific and tumour-type–specific global methylation profiles. This and …

Clustering of hypermethylated genes in neuroblastoma

MM Van Noesel, S Van Bezouw… - Genes …, 2003 - Wiley Online Library
CpG‐island hypermethylation of gene promoters is a frequent mechanism for gene
inactivation in tumors. Many neuroblastomas have hypermethylation and down‐regulation of …