[HTML][HTML] Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers

M Ando, Y Saito, G Xu, NQ Bui… - Nature …, 2019 - nature.com
Although promoter-associated CpG islands have been established as targets of DNA
methylation changes in cancer, previous studies suggest that epigenetic dysregulation …

Synergy of demethylation and histone deacetylase inhibition in the re-expression of genes silenced in cancer

EE Cameron, KE Bachman, S Myöhänen, JG Herman… - Nature …, 1999 - nature.com
Densely methylated DNA associates with transcriptionally repressive chromatin
characterized by the presence of underacetylated histones 1, 2. Recently, these two …

Identification of cis-suppression of human disease mutations by comparative genomics

DM Jordan, SG Frangakis, C Golzio, CA Cassa… - Nature, 2015 - nature.com
Patterns of amino acid conservation have served as a tool for understanding protein
evolution. The same principles have also found broad application in human genomics …

[PDF][PDF] Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma

H Noushmehr, DJ Weisenberger, K Diefes, HS Phillips… - Cancer cell, 2010 - cell.com
We have profiled promoter DNA methylation alterations in 272 glioblastoma tumors in the
context of The Cancer Genome Atlas (TCGA). We found that a distinct subset of samples …

Genome-wide CpG island methylation analyses in non-small cell lung cancer patients

G Heller, VN Babinsky, B Ziegler, M Weinzierl… - …, 2013 - academic.oup.com
DNA methylation is part of the epigenetic gene regulation complex, which is relevant for the
pathogenesis of cancer. We performed a genome-wide search for methylated CpG islands …

Whole-genome bisulfite sequencing maps from multiple human tissues reveal novel CpG islands associated with tissue-specific regulation

I Mendizabal, SV Yi - Human molecular genetics, 2016 - academic.oup.com
CpG islands (CGIs) are one of the most widely studied regulatory features of the human
genome, with critical roles in development and disease. Despite such significance and the …

Identification of novel methylation markers in cervical cancer using restriction landmark genomic scanning

SS Wang, DJ Smiraglia, YZ Wu, S Ghosh, JS Rader… - Cancer research, 2008 - AACR
Aberrant methylation of CpG islands in gene promoters often represents an early clonal
event in carcinogenesis. Accordingly, defining methylation profiles may be useful for …

Oligonucleotide‐based microarray for DNA methylation analysis: principles and applications

H Shi, S Maier, I Nimmrich, PS Yan… - Journal of cellular …, 2003 - Wiley Online Library
Gene silencing via promoter CpG island hypermethylation offers tumor cells growth
advantages. This epigenetic event is pharmacologically reversible, and uncovering a unique …

CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer

DJ Weisenberger, KD Siegmund, M Campan… - Nature …, 2006 - nature.com
Aberrant DNA methylation of CpG islands has been widely observed in human colorectal
tumors and is associated with gene silencing when it occurs in promoter areas. A subset of …

Silencing of bidirectional promoters by DNA methylation in tumorigenesis

J Shu, J Jelinek, H Chang, L Shen, T Qin, W Chung… - Cancer research, 2006 - AACR
CpG island methylation within promoters is known to silence individual genes in cancer. The
involvement of this process in silencing gene pairs controlled by bidirectional promoters is …