Synthetic CpG islands reveal DNA sequence determinants of chromatin structure
E Wachter, T Quante, C Merusi, A Arczewska, F Stewart… - Elife, 2014 - elifesciences.org
The mammalian genome is punctuated by CpG islands (CGIs), which differ sharply from the
bulk genome by being rich in G+ C and the dinucleotide CpG. CGIs often include …
bulk genome by being rich in G+ C and the dinucleotide CpG. CGIs often include …
Intragenic CpG islands play important roles in bivalent chromatin assembly of developmental genes
SM Lee, J Lee, KM Noh, WY Choi… - Proceedings of the …, 2017 - National Acad Sciences
CpG, 5′-C-phosphate-G-3′, islands (CGIs) have long been known for their association
with enhancers, silencers, and promoters, and for their epigenetic signatures. They are …
with enhancers, silencers, and promoters, and for their epigenetic signatures. They are …
CpG islands and the regulation of transcription
Vertebrate CpG islands (CGIs) are short interspersed DNA sequences that deviate
significantly from the average genomic pattern by being GC-rich, CpG-rich, and …
significantly from the average genomic pattern by being GC-rich, CpG-rich, and …
CpG islands influence chromatin structure via the CpG-binding protein Cfp1
JP Thomson, PJ Skene, J Selfridge, T Clouaire, J Guy… - Nature, 2010 - nature.com
CpG islands (CGIs) are prominent in the mammalian genome owing to their GC-rich base
composition and high density of CpG dinucleotides,. Most human gene promoters are …
composition and high density of CpG dinucleotides,. Most human gene promoters are …
CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters
One clear hallmark of mammalian promoters is the presence of CpG islands (CGIs) at more
than two-thirds of genes, whereas TATA boxes are only present at a minority of promoters …
than two-thirds of genes, whereas TATA boxes are only present at a minority of promoters …
Fundamental diversity of human CpG islands at multiple biological levels
CpG islands (CGIs) are commonly used as genomic markers to study the patterns and
regulatory consequences of DNA methylation. Interestingly, recent studies reveal a …
regulatory consequences of DNA methylation. Interestingly, recent studies reveal a …
R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters
PA Ginno, PL Lott, HC Christensen, I Korf, F Chédin - Molecular cell, 2012 - cell.com
CpG islands (CGIs) function as promoters for approximately 60% of human genes. Most of
these elements remain protected from CpG methylation, a prevalent epigenetic modification …
these elements remain protected from CpG methylation, a prevalent epigenetic modification …
Sequence determinants, function, and evolution of CpG islands
A Angeloni, O Bogdanovic - Biochemical Society Transactions, 2021 - portlandpress.com
In vertebrates, cytosine-guanine (CpG) dinucleotides are predominantly methylated, with∼
80% of all CpG sites containing 5-methylcytosine (5mC), a repressive mark associated with …
80% of all CpG sites containing 5-methylcytosine (5mC), a repressive mark associated with …
Intragenic CpG islands and their impact on gene regulation
JA Cain, B Montibus, RJ Oakey - Frontiers in Cell and Developmental …, 2022 - frontiersin.org
The mammalian genome is depleted in CG dinucleotides, except at protected regions where
they cluster as CpG islands (CGIs). CGIs are gene regulatory hubs and serve as …
they cluster as CpG islands (CGIs). CGIs are gene regulatory hubs and serve as …
[HTML][HTML] CpG islands as genomic footprints of promoters that are associated with replication origins
F Antequera, A Bird - Current Biology, 1999 - cell.com
The primary target for DNA methylation in mammalian genomes is cytosine in the
dinucleotide CpG. High densities of CpG dinucleotides are found in CpG islands, but …
dinucleotide CpG. High densities of CpG dinucleotides are found in CpG islands, but …