Synthetic CpG islands reveal DNA sequence determinants of chromatin structure

E Wachter, T Quante, C Merusi, A Arczewska, F Stewart… - Elife, 2014 - elifesciences.org
The mammalian genome is punctuated by CpG islands (CGIs), which differ sharply from the
bulk genome by being rich in G+ C and the dinucleotide CpG. CGIs often include …

Intragenic CpG islands play important roles in bivalent chromatin assembly of developmental genes

SM Lee, J Lee, KM Noh, WY Choi… - Proceedings of the …, 2017 - National Acad Sciences
CpG, 5′-C-phosphate-G-3′, islands (CGIs) have long been known for their association
with enhancers, silencers, and promoters, and for their epigenetic signatures. They are …

CpG islands and the regulation of transcription

AM Deaton, A Bird - Genes & development, 2011 - genesdev.cshlp.org
Vertebrate CpG islands (CGIs) are short interspersed DNA sequences that deviate
significantly from the average genomic pattern by being GC-rich, CpG-rich, and …

CpG islands influence chromatin structure via the CpG-binding protein Cfp1

JP Thomson, PJ Skene, J Selfridge, T Clouaire, J Guy… - Nature, 2010 - nature.com
CpG islands (CGIs) are prominent in the mammalian genome owing to their GC-rich base
composition and high density of CpG dinucleotides,. Most human gene promoters are …

CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters

R Fenouil, P Cauchy, F Koch, N Descostes… - Genome …, 2012 - genome.cshlp.org
One clear hallmark of mammalian promoters is the presence of CpG islands (CGIs) at more
than two-thirds of genes, whereas TATA boxes are only present at a minority of promoters …

Fundamental diversity of human CpG islands at multiple biological levels

J Zeng, HK Nagrajan, SV Yi - Epigenetics, 2014 - Taylor & Francis
CpG islands (CGIs) are commonly used as genomic markers to study the patterns and
regulatory consequences of DNA methylation. Interestingly, recent studies reveal a …

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters

PA Ginno, PL Lott, HC Christensen, I Korf, F Chédin - Molecular cell, 2012 - cell.com
CpG islands (CGIs) function as promoters for approximately 60% of human genes. Most of
these elements remain protected from CpG methylation, a prevalent epigenetic modification …

Sequence determinants, function, and evolution of CpG islands

A Angeloni, O Bogdanovic - Biochemical Society Transactions, 2021 - portlandpress.com
In vertebrates, cytosine-guanine (CpG) dinucleotides are predominantly methylated, with∼
80% of all CpG sites containing 5-methylcytosine (5mC), a repressive mark associated with …

Intragenic CpG islands and their impact on gene regulation

JA Cain, B Montibus, RJ Oakey - Frontiers in Cell and Developmental …, 2022 - frontiersin.org
The mammalian genome is depleted in CG dinucleotides, except at protected regions where
they cluster as CpG islands (CGIs). CGIs are gene regulatory hubs and serve as …

[HTML][HTML] CpG islands as genomic footprints of promoters that are associated with replication origins

F Antequera, A Bird - Current Biology, 1999 - cell.com
The primary target for DNA methylation in mammalian genomes is cytosine in the
dinucleotide CpG. High densities of CpG dinucleotides are found in CpG islands, but …